Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq8 95.1 1e-14 seq9 91.5 1e-13 >seq8 Length=44809562 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 118488 ATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCTGTCAGGTG 118547 ||| || |||||||||||||| ||| || || |||||||| ||| | || || Sbjct 4273081 ATACACGTGAGCATCCCCAATGACATGGATAAAATCACCAGGAACAAGATCACACACATG 4273022 Query 118548 AGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCCAT 118607 ||| | |||| | || | | | ||| || | ||||| || ||||| || ||||| Sbjct 4273021 AGCTAGCATGCAGGTAAGAAGAGAGTAAGAAGCAATGTTAAACGGCACACCAAGGCCCAT 4272962 Query 118608 GTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTGACT 118667 || ||||| | ||| |||| ||| || ||||||||||| | || ||||| ||||| Sbjct 4272961 ATCCGCTGAACGCTGATACATTTGACATGAGAGCTCCCCTTCCGCCACATAGAACTGTGC 4272902 Query 118668 TATGATGTGACATGGAGGCAGAACCAT 118694 | ||||| |||||||| || |||| Sbjct 4272901 GAACATGTGGCATGGAGGAAGCGCCAT 4272875 >seq9 Length=3036023 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 118585 TTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCC 118644 ||||| || ||||| ||||||||||||||||| | ||| |||| ||| || || ||||| Sbjct 54974 TTAAACGGTACACCAAGACCCATGTCTGCTGAGCGCTGATACATTTGACACGAAAGCTCT 54915 Query 118645 CCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 || | ||||||||||||||| | ||||| || ||||| || |||| Sbjct 54914 CCATATGCAACATAAAACTGTGCAAACATGTGGCAAGGAGGAAGTGCCAT 54865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414463944095380