Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq5 102 6e-17 seq3 102 6e-17 seq2 91.5 1e-13 >seq5 Length=39062406 Score = 102 bits (112), Expect = 6e-17 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||||||||| || | || || || ||| || | || || || ||| || Sbjct 24281427 ATGCAAATTTTTGTGAAGACCTTGACAGGAAAGACTATCACTTTGGAGGTGGAGAGCTCC 24281486 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || |||| |||||| || || |||||||| ||| | || ||| | Sbjct 24281487 GATACCATTGACAAC--GTCAAAGCCAAGATCCAAGACAAAGAGGGTATCCCACCGGACC 24281544 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966 |||| |||| || ||||||||||| ||| | || || | ||| | |||| | |||||| Sbjct 24281545 AGCAGAGGTTGATCTTTGCCGGAAAGCAACTTGAGGATGGACGTACTCTTG-CTGATTAC 24281603 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||| || ||| ||| | || ||||| |||||| | ||||| ||| Sbjct 24281604 AACATCCAGAAGGAGTCGACTCTTCACTTGGTCTTGCGTCTACGTGGTGGC 24281654 >seq3 Length=44396707 Score = 102 bits (112), Expect = 6e-17 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||||||||| || | || || || ||| || | || || || ||| || Sbjct 21554483 ATGCAAATTTTTGTGAAGACCTTGACAGGAAAGACTATCACTTTGGAGGTGGAGAGCTCC 21554424 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || |||| |||||| || || |||||||| ||| | || ||| | Sbjct 21554423 GATACCATTGACAAC--GTCAAAGCCAAGATCCAAGACAAAGAGGGTATCCCACCGGACC 21554366 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 |||| |||| || ||||||||||| ||| | || || | ||| | |||| | |||||| Sbjct 21554365 AGCAGAGGTTGATCTTTGCCGGAAAGCAACTTGAGGATGGACGTACTCTTG-CTGATTAC 21554307 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||| || ||| ||| | || ||||| |||||| | ||||| ||| Sbjct 21554306 AACATCCAGAAGGAGTCGACTCTTCACTTGGTCTTGCGTCTACGTGGTGGC 21554256 >seq2 Length=44367670 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| ||||| | || || || ||| || | || || || ||| || Sbjct 25764227 ATGCAGATTTTTGTTAAAACATTGACGGGAAAGACTATCACTTTGGAGGTTGAGAGCTCC 25764168 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| |||||| || || |||||||| ||| |||| ||| | Sbjct 25764167 GACACCATTGACAAT--GTCAAAGCCAAGATCCAAGACAAAGAGGGTATTCCCCCGGACC 25764110 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 |||| |||| || || || || || ||| | || || | ||| | |||| | |||||| Sbjct 25764109 AGCAGAGGTTGATCTTCGCAGGCAAGCAACTCGAGGATGGACGTACTCTTG-CTGATTAC 25764051 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||| ||| | || ||||| |||||| | ||||| || Sbjct 25764050 AACATCCAGAAGGAGTCTACTCTTCACTTGGTCTTGCGTCTACGTGGAGG 25764001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355851362149215