Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq6 95.1 1e-14 seq2 95.1 1e-14 seq7 87.8 2e-12 seq5 87.8 2e-12 seq4 86.0 5e-12 seq3 86.0 5e-12 seq8 82.4 7e-11 >seq6 Length=32494073 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| || ||||| |||||| || || || || || || ||||| || | Sbjct 7250702 CGCAAGACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCAGCTAGTGTGCGACCA 7250761 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || |||||||| ||||| || || || |||||||||||||| | || | || ||| ||| Sbjct 7250762 TCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTG 7250821 Query 39190 TCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| ||||| ||||| ||| | | | || ||| ||| || || | || || Sbjct 7250822 TCCTGAATTTTAGCTTTGA-CGTTGTCAATGGTGTCGGAGCTCTCAACTTCTAGAGTAAT 7250880 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||| || || || || |||||||| ||||| Sbjct 7250881 CGTCTTTCCGGTGAGGGTCTTGACAAAGATCTGCAT 7250916 >seq2 Length=44367670 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104 |||| | | || ||||| | || || || ||||| || || || ||| || || || Sbjct 25763988 AAATATCTGCATACCTCCACGTAGACGCAAGACCAAGTGAAGAGTAGACTCCTTCTGGAT 25764047 Query 39105 ATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTG 39164 || ||||| ||||| || ||| | || || || || ||||| || || || | | ||| Sbjct 25764048 GTTGTAATCAGCAAGAGTACGTCCATCCTCGAGTTGCTTGCCTGCGAAGATCAACCTCTG 25764107 Query 39165 CTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC 39224 |||||| | ||| | | ||||||||| ||| || ||||| | | | || || Sbjct 25764108 CTGGTCCGGGGGAATACCCTCTTTGTCTTGGATCTTGGCTTTGACATTGTCAATGGTGTC 25764167 Query 39225 GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||| || |||| |||||| | |||||||||| ||||||||||| || ||||| Sbjct 25764168 GGAGCTCTCAACCTCCAAAGTGATAGTCTTTCCCGTCAATGTTTTAACAAAAATCTGCAT 25764227 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| | || || |||||||| || || || ||| || || || || || || Sbjct 25763769 CATGCCTCCACGTAGTCGCAACACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTC 25763828 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || | || || | || || ||||| || || || || || |||||||||||||| | Sbjct 25763829 AGCCAAGGTGCGACCATCCTCGAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGG 25763888 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACT 39232 || | | |||||||||| ||||| |||| ||| | | | || ||| || Sbjct 25763889 AGGAATACCCTCTTTGTCCTGAATTTTGGCCTTGA-CGTTGTCTATGGTGTCGGAGCTCT 25763947 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || | ||||| | ||||| |||| ||| || ||||| || ||||| Sbjct 25763948 CCACTTCTAGAGTGATGGTCTTTCCTGTCAACGTCTTGACAAATATCTGCAT 25763999 >seq7 Length=41685129 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | ||||| ||||| || ||||| ||| || || || || || ||||| Sbjct 26880629 CCTCCTCTCAGGCGTAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 26880570 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 || || | |||| || ||||| || || || || || || ||||||||||| || ||| Sbjct 26880569 AGCGTCCTCCCGTCTTCGAGCTGCTTCCCGGCGAAGATCAGTCGCTGCTGGTCTGGCGGG 26880510 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | || || |||||| ||| || |||| | | | ||| ||| || || || Sbjct 26880509 ATCCCT-TCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCGGATGATTCGAC 26880451 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 || | || || | || ||||| || ||||| || ||||| ||||| ||| Sbjct 26880450 CTCTAGGGTTATCGTCTTCCCCGTAAGGGTTTTCACGAAGATCTGCATTTTT 26880399 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||||||||| | || | || | || || || ||| || || || || || ||||| Sbjct 18540398 GCCTCCTCTCAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGC 18540457 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 | || || |||| || ||||| || || || || || || ||||||||||| | ||| Sbjct 18540458 TAAGGTGCGCCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGGGG 18540517 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCA 39235 | || || |||||| ||| || |||| ||| | | | || ||| || |||| Sbjct 18540518 GATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGGATTCCA 18540576 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 | || | ||||| | || ||||| || ||||| || ||||| ||||||||| Sbjct 18540577 CCTCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTT 18540629 >seq5 Length=39062406 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || ||||| || || ||| |||| || ||||| || || || || Sbjct 25970312 CTCCTTCTGGATGTTGTAGTCGGCTAGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAA 25970371 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || ||||||||||| | || | || || |||||| ||| || ||||| ||| Sbjct 25970372 GATGAGTCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCTTTGA-CGT 25970430 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | || ||| || || || || | ||||| | || ||||| || ||||| | Sbjct 25970431 TGTCGATGGTGTCGGAGGATTCAACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCA 25970490 Query 39272 CAAAGATTTGCATCTTT 39288 | ||||| ||||||||| Sbjct 25970491 CGAAGATCTGCATCTTT 25970507 >seq4 Length=32756842 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || ||||| ||| || || || || || ||||| || || ||| |||| || ||||| Sbjct 29446821 TGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCGAGCTGC 29446880 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 || || || || || |||||||||||||| |||||| | || || ||||| ||| || Sbjct 29446881 TTACCGGCGAAGATCAGACGCTGCTGGTCAGGTGGG-ATGCCTTCCTTGTCTTGGATCTT 29446939 Query 39201 CTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 |||| ||| | | | || ||| || || || || | || || | || |||| Sbjct 29446940 GGCCTTGA-CGTTGTCGATGGTGTCGGAGGATTCGACCTCGAGGGTTATTGTCTTACCCG 29446998 Query 39260 TCAGCGTTTTAACAAAGATTTGCATCTTTACGCCG 39294 | || ||||| || ||||| ||||||||| || || Sbjct 29446999 TGAGGGTTTTCACGAAGATCTGCATCTTTGCGGCG 29447033 >seq3 Length=44396707 Score = 86.0 bits (94), Expect = 5e-12 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| | | |||||||||||||| || || ||| || || || || ||||| Sbjct 19911698 CATGCCTCCACGCAGACGTAACACCAAATGAAGAGTTGACTCCTTCTGAATGTTGTAATC 19911757 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGG 39172 || | || || | || || ||||||||||| || || || ||||| ||||||| ||| Sbjct 19911758 TGCCAAGGTGCGACCATCCTCGAGCTGTTTGCCAGCGAAGATGAGACGTTGCTGGTCCGG 19911817 Query 39173 TGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGAC 39231 |||| | | ||| || || |||||| || | ||| | | | || ||| | Sbjct 19911818 TGGG-ATCCCCTCCTTATCTTGGATTTTGGCCTTCA-CGTTGTCAATAGTGTCGGAGCTC 19911875 Query 39232 TCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| || | ||||| | || || || || || ||||||||||| ||||| Sbjct 19911876 TCCACCTCTAGAGTGATGGTCTTCCCGGTAAGTGTCTTAACAAAGATCTGCAT 19911928 >seq8 Length=44809562 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | ||| | ||| |||||| ||| ||||| || || || || || Sbjct 30326201 CCACCTCTCAGACGAAGCACAAGATGGAGCGTGGACTCCTTTTGGATGTTGTAGTCAGCG 30326142 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 || || || | || || ||||| || || ||||| ||||| | |||||| || |||||| Sbjct 30326141 AGCGTGCGCCCATCCTCCAGCTGCTTACCTGCAAAGATAAGCCTCTGCTGATCCGGTGGG 30326082 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTC 39233 | | |||||| ||| ||| || |||| | | | || || |||| || Sbjct 30326081 -ATTCCCTCTTTATCCTGGATCTTAGCCTTGACATTGTCTATGGTGTCTGAGCTC---TC 30326026 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| ||||| |||| || || || || || |||||||||||||| Sbjct 30326025 AACCTCCAAGGTGATGGTTTTACCGGTGAGGGTCTTGACAAAGATTTGCAT 30325975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429532276703585