Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq8 100 2e-16 seq2 93.3 3e-14 >seq8 Length=44809562 Score = 100 bits (110), Expect = 2e-16 Identities = 190/276 (69%), Gaps = 8/276 (3%) Strand=Plus/Minus Query 29669 TAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29728 || ||||||||||| || | | |||| ||| || || || | || | || ||| Sbjct 4273080 TACACGTGAGCATCCCCAATGACATGGATAAAATCACCAGGAACAAGATCACACACATGA 4273021 Query 29729 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATG 29788 || | |||| | || || |||||||| || |||||||| ||||| || || ||||| Sbjct 4273020 GCTAGCATGCAGGTAAGAAGAGAGTAAGAAGCAATGTTAAACGGCACACCAAGGCCCATA 4272961 Query 29789 TCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTG---A 29845 ||| |||| | ||| || | || || |||||||| || || ||| || ||||| Sbjct 4272960 TCCGCTGAACGCTGATACATTTGACATGAGAGCTCCCCTTCCGCCACATAGAACTGTGCG 4272901 Query 29846 CACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAG-TCTTTGGGGTTCCAGGCACA 29904 ||||| ||||| |||||||| ||||| | || || || |||||||| || | Sbjct 4272900 AACATG---TGGCATGGAGGAAGCGCCATCA-ACTTGAGATCAGAAGGGTTCCAAGCCGA 4272845 Query 29905 CACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 29940 | ||||| |||| || || || |||||| |||| Sbjct 4272844 TAGTATGATACGCCGATCATCAGGATTGTTCTTGAT 4272809 >seq2 Length=44367670 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/224 (71%), Gaps = 10/224 (4%) Strand=Plus/Plus Query 29722 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAG 29781 ||||||||| | ||| | || || || ||||| || |||||||| || || || || Sbjct 42352559 GACGTGAGCGAGGATGCATGTAAGAAGGGAGTAAGAAGCAATGTTAAAAGGTACACCAAG 42352618 Query 29782 CCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGT-CGCTCACGTAAA 29840 ||||| || |||| | ||| || | || ||||| |||||||| | ||| ||||||| Sbjct 42352619 ACCCATATCAGCTGAGCGCTGATACATTTGACACGAAAGCTCTCCATTCGCA-ACGTAAA 42352677 Query 29841 ACTG---ACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAA-GTCTTTGGGGTTC 29896 |||| | ||||| ||||| |||||||| ||||| | | || ||| || ||| Sbjct 42352678 ACTGAGCAAACATG---TGGCATGGAGGAAGTGCCAT-CGCCTTAAGGTCAGAAGGATTC 42352733 Query 29897 CAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 29940 || ||| ||| || || |||| || || || |||||| |||| Sbjct 42352734 CAAGCAGACATTATAATCCGCCGATCGTCAGGATTGTTCTTGAT 42352777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406150601959870