Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq7 111 2e-19 >seq7 Length=41685129 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| || || | || | || |||| ||| | || | || |||||||| ||||||| Sbjct 36269582 CCTCCTTGGTCAACGTAGCGAGCAGTGTCATTGAATACCCGCAGCATTGGAACAATACCG 36269523 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 ||||||||||||||||| ||| ||| |||||||| | || || || || || || Sbjct 36269522 TTAGATGTTCCATTTGTGCCACGAATGTAACTTCCTGTCGCACGGATGTTGTGAACTGAA 36269463 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | |||||||| || || ||| ||| | || || |||||||||||| || || Sbjct 36269462 ACACCTATTCCCCCAGCTGATTTACTTATAACTGCACACTCTTTCAATGTATCATATATT 36269403 Query 78339 CCCTCTATACTGTCATCCATCATG 78362 ||||| || || |||||| ||||| Sbjct 36269402 CCCTCAATGCTATCATCCTTCATG 36269379 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| || || | ||| | || |||| |||| | || | || |||||||| |||||| Sbjct 5826852 CCTCCTTGGTCAACATAACGAGCAGTGTCATTAAATACACGCAGCATTGGAACAATACCA 5826793 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 ||||| | ||||| || ||| ||| ||||||||| || || || || ||| || Sbjct 5826792 TTAGAAGCACCATTGGTGCCACGAATGTAACTTCCAGAAGCACGGATGTTGTGAATTGAA 5826733 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || || || || ||| || | || || |||||||||||| || || Sbjct 5826732 ACACCGATACCCCCAGCTGATTTACTAATAACTGCACACTCTTTCAATGTATCATATATC 5826673 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 || || || || |||||| ||||| | ||||| ||||| Sbjct 5826672 CCTTCAATGCTATCATCCTTCATGCAGATCAGAAAGCAGCT 5826632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694646700848800