Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq1734 100 2e-16 >seq1734 Length=1503 Score = 100 bits (110), Expect = 2e-16 Identities = 215/316 (68%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 96758 CCATTTCGTTGCTTTCCGATAATTACCTCGGCAATGCCCTTCATTTCGCTATCCGGGTGA 96817 || || || ||||| |||| || | |||||||| ||||| || | ||||||| Sbjct 643 CCGTTCCGGTGCTTGCCGAGGATCAACTCGGCAACCCCCTTGTACTCAGTGTCCGGGTTG 702 Query 96818 TAAACTTCGTCGCGATACAAAAACATGATCAGGTCTGCGTCCTGCTCAATTGCTCCTGAT 96877 || || ||||| ||||| | |||||||| | ||| ||||||||||| || || || || Sbjct 703 TAGACCTCGTCTCGATAGACGAACATGATGATGTCCGCGTCCTGCTCGATCGCGCCGGAC 762 Query 96878 TCACGTAAATCTGAATTTACCGGTCGTTTGTCCGCACGCTGTTCAAGCGATCGATTAAGT 96937 || || || |||| || || || || |||| | ||||| ||| | || | Sbjct 763 TCCCGCAAGTCTGCGTTCACAGGGCGCTTGTTGGGCCGCTGCTCACACTGGCGGGACAAC 822 Query 96938 TGTGACAATGCCACCAC-CGGTACTTGTAATTCCTTCGCCAACGCCTTCAGTGAGCGAGA 96996 || || | || | || || | ||| || || || |||||| |||||| || || || Sbjct 823 TGCGATAGCGCGATGACGGGGCAATTG-AACTCTTTGGCCAACCCCTTCAATGCCCGGGA 881 Query 96997 AATCTCGGCAATTTCCAGCGTTCGGTT-ATCTTGCAGCTCCGGGACGCGCATAAGTTGCA 97055 ||||| || | ||| | || ||||| || | ||| | ||| |||||| || |||| Sbjct 882 GATCTCCGCGACCTCCTGAGTGCGGTTCCCCTCGTAGC-CTGGGCAGCGCATCAGCTGCA 940 Query 97056 GGTAGTCGATCATAAT 97071 |||| || | ||| || Sbjct 941 GGTAATCAACCATGAT 956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330888936437470