Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq3 210 3e-49 seq4 181 1e-40 >seq3 Length=44396707 Score = 210 bits (232), Expect = 3e-49 Identities = 432/638 (68%), Gaps = 7/638 (1%) Strand=Plus/Plus Query 186341 CAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTCCTCATCTACCC 186400 |||| | || | || |||||||| || ||||| |||||| || || || || || || Sbjct 24109906 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 24109965 Query 186401 TCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCAATCTTTAGATT 186460 || || || || |||||||| | || ||||| || || || || ||| |||| Sbjct 24109966 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 24110025 Query 186461 CCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGT 186520 | | | || ||||||| || || || ||| | ||||| |||| || || |||| | Sbjct 24110026 CATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGCTGGGAAT 24110085 Query 186521 AGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACTGTAGAAAATAC 186580 || ||| | || || | |||||| | | || || |||||| |||||||| ||||| Sbjct 24110086 TGCCGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAG-AAATAT 24110144 Query 186581 TCTTTA--TGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATACGACGCAAGAA 186638 | |||| |||| |||| || ||||| | ||| || || | | | |||| Sbjct 24110145 TTTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCC 24110204 Query 186639 GAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTTCGGAATTGCG 186698 |||||||| ||||| |||||||| || ||| | || ||||||| ||||| || ||| Sbjct 24110205 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCT 24110264 Query 186699 TTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTATGGGTCTTTGG 186758 ||| |||||| | |||| | || ||||| ||| | ||||| || || | ||| | || Sbjct 24110265 TTTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGG 24110324 Query 186759 ACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGTGCTTATGACTTTGTAAGT 186818 | | | ||| || | ||||| ||| | ||||| |||| |||| ||| | Sbjct 24110325 ATGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCC 24110384 Query 186819 CAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAGAATATCCTA 186878 || || | | ||||| || ||||| || || || || ||||| || || ||||| || Sbjct 24110385 CAAGAAATTTGTGCAGCGGAAGATCCGGACTT-GAAACTTTCTACACTAAAAATATTCTT 24110443 Query 186879 TTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGAT---CAACCACATGAAAACTTT 186935 || || |||||| | || | |||||||| | |||| || || ||||||||| || Sbjct 24110444 TTAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATT 24110503 Query 186936 GTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCT 186973 |||| |||| || || || ||| | || | | |||| Sbjct 24110504 ATATTCACTGAGGAGGTTTTACCACGTGGAAGCACTCT 24110541 >seq4 Length=32756842 Score = 181 bits (200), Expect = 1e-40 Identities = 216/293 (74%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 183517 TTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACCGTCTCGGTATGCGTCCTTGGATC 183576 || || || |||| |||||| |||||| | || | |||| ||||| |||| |||||| Sbjct 25315239 TTTTGTTATATGGATCGTGATTGGGAACTTAGTTTCTGTCTGGGTATACGTCTTTGGATT 25315180 Query 183577 TGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGCTGTCTTCCTGGTCTATCCTTTC 183636 |||||| ||| || ||||||| || | ||||| ||| || |||| || | Sbjct 25315179 GCTGTTGCATATTCAGCTTCTGTTGCAATTGTTATTGCTGTTTTCTTGATCTACCCAATT 25315120 Query 183637 GGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATG 183696 |||||||| |||| | |||||||||| || || ||| ||| || || |||| |||| Sbjct 25315119 GGTCAAGGAAGTTTTTCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATG 25315060 Query 183697 CTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCT 183756 |||| || ||||| ||||||||||| || |||||||| || |||||| | ||||| ||| Sbjct 25315059 GTTGTATTTCAAGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCT 25315000 Query 183757 GGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTC 183809 ||||| ||||| || | || || ||||| ||||| |||| |||| | ||| Sbjct 25314999 GGTGTATTCGGCGGCTTCCTATTTAGTGCTATGCATAGTTCCTTGGTAATTTC 25314947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622050610385400