Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq3 244 1e-59 seq4 188 8e-43 seq7 105 7e-18 seq8 84.2 2e-11 >seq3 Length=44396707 Score = 244 bits (270), Expect = 1e-59 Identities = 442/642 (69%), Gaps = 7/642 (1%) Strand=Plus/Plus Query 165533 CAATGCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCC 165592 |||| | || | ||||||||||| |||||||| || ||| || ||||| || ||||| Sbjct 24109906 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 24109965 Query 165593 TCTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATT 165652 || || ||||| |||||||| | || || || || || || || || ||||| Sbjct 24109966 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 24110025 Query 165653 CCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGT 165712 | | ||||| |||||||||| ||||| ||| | |||||| | ||||| || |||| | Sbjct 24110026 CATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGCTGGGAAT 24110085 Query 165713 AGCAGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATAC 165772 || ||| | | |||| || || | | || ||| |||||| ||| ||||| |||| Sbjct 24110086 TGCCGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGA-AATAT 24110144 Query 165773 TTTGTA--TGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAA 165830 ||| || |||| ||||||| ||||| | || || ||| | | ||| | Sbjct 24110145 TTTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCC 24110204 Query 165831 GAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCT 165890 || ||||||||||| |||||||| |||||||| || ||||| | || ||||| |||| Sbjct 24110205 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCT 24110264 Query 165891 TTCAGCAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGG 165950 || |||||| | |||| | || ||||||||| | ||||| || || | || | || Sbjct 24110265 TTTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGG 24110324 Query 165951 ACAAGTTCTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCT 166010 | ||| || ||| || | ||||| || | || || |||| |||| || | || Sbjct 24110325 ATGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCC 24110384 Query 166011 CAGGAGATTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCTC 166070 || || ||| | || || || ||||| || ||||||| ||||| || ||||| || || Sbjct 24110385 CAAGAAATTTGTGCAGCGGAAGATCCGGA-CTTGAAACTTTCTACACTAAAAATATTCTT 24110443 Query 166071 CTTAATGAAGGACTCCGTGCCTGGTT---GGCTCCTGTAGACCAACCTCATGAGAACTTT 166127 | || ||||| | || | ||| | ||||| | | || |||||||| ||| || Sbjct 24110444 TTAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATT 24110503 Query 166128 GTGTTCCCTGAAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 | ||| |||| || || || ||| | || | | | |||||| Sbjct 24110504 ATATTCACTGAGGAGGTTTTACCACGTGGAAGCACTCTTTAA 24110545 >seq4 Length=32756842 Score = 188 bits (208), Expect = 8e-43 Identities = 215/289 (74%), Gaps = 0/289 (0%) Strand=Plus/Minus Query 164254 TTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGT 164313 ||| |||| |||||| ||||||||| || | |||| ||||| |||| ||||||| || Sbjct 25315234 TTATATGGATCGTGATTGGGAACTTAGTTTCTGTCTGGGTATACGTCTTTGGATTGCTGT 25315175 Query 164314 AGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCA 164373 ||||| || ||| |||| || | | ||| || ||| || |||| || | ||||| Sbjct 25315174 TGCATATTCAGCTTCTGTTGCAATTGTTATTGCTGTTTTCTTGATCTACCCAATTGGTCA 25315115 Query 164374 AGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGAACCTTCAACTACATGTTGGT 164433 ||| ||| ||| ||| |||||||| || |||||||| || ||||||| ||| | || Sbjct 25315114 AGGAAGTTTTTCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGT 25315055 Query 164434 CTTCCAGGCTGAGCACAACATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGT 164493 || || |||||||||||||| || |||||||| || || ||| | || ||||| ||||| Sbjct 25315054 ATTTCAAGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 25314995 Query 164494 GTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACTTCT 164542 || ||||| | || || ||||| ||||| |||| |||| | |||| Sbjct 25314994 ATTCGGCGGCTTCCTATTTAGTGCTATGCATAGTTCCTTGGTAATTTCT 25314946 >seq7 Length=41685129 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 161539 GTGTGAAGACGACCAGTACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTA 161598 ||| || |||||| ||| | || ||||| || |||||||||||| | || | ||| Sbjct 40487277 GTGCGACGACGACGTCTACGTCCTCGACGCCGCGGAGGAAGCGGGTATCGATCTGCCCTA 40487218 Query 161599 CTCGTGTCGTGCAGGCGCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGA 161658 ||| || ||||| || |||| ||| ||||| || ||| ||||||||||| || | || Sbjct 40487217 CTCATGCCGTGCGGGATCTTGCTCGAGCTGCGCCGGGAAAGTCGTCTCTGGCTCCATTGA 40487158 Query 161659 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTG 161718 ||| | |||||| |||| |||| |||||||| || | || | | || || || Sbjct 40487157 CCAGACGGACCAGAGCTTCTTGGATGATGACCAGATGGGCGAGGGGTATGTCCTCACCTG 40487098 Query 161719 TGTTTCTTATCCCACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGA 161766 ||| |||| || || ||| || || |||||| | |||||||| Sbjct 40487097 TGTGGCTTACCCAACTTCTGATGTCGTCATCGAGACTCACAAAGAAGA 40487050 >seq8 Length=44809562 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 161539 GTGTGAAGACGACCAGTACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTA 161598 ||| || |||||| ||| | || ||||| ||||||||||| || | ||| | || Sbjct 31673081 GTGCGACGACGACGTCTACGTCCTCGACGCTGCTGAGGAAGCCGGAATCGACTTGCCTTA 31673022 Query 161599 CTCGTGTCGTGCAGGCGCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGA 161658 ||| || ||||| || |||| || || || || ||| | || ||||| | || || Sbjct 31673021 CTCTTGCCGTGCTGGTTCTTGCTCCAGCTGTGCAGGTAAAGTTGTGTCTGGATCTGTTGA 31672962 Query 161659 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTG 161718 ||| |||||| ||||| || |||||||| || | | || ||| |||| ||||| Sbjct 31672961 CCAGTCTGACCAGAGTTTCCTCGATGATGACCAGATTGCTGAAGGATTCGTTCTCACTTG 31672902 Query 161719 TGTTTCTTATCCCACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGA 161769 || ||||||| || ||| | |||||||| | | |||||| || Sbjct 31672901 TGCGGCTTATCCTACTTCTGATGTTACCATTGAGACCCACAGAGAAGAAGA 31672851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557636659619400