Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq3 228 1e-54 seq4 158 1e-33 seq8 95.1 1e-14 >seq3 Length=44396707 Score = 228 bits (252), Expect = 1e-54 Identities = 437/638 (68%), Gaps = 7/638 (1%) Strand=Plus/Plus Query 179219 CAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTGTGTCTGTTTTTCTCATGTATCC 179278 |||| ||||| | || ||||||||||||||||| ||||| || || ||||| || ||||| Sbjct 24109906 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 24109965 Query 179279 TCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGGAGTTGCAGCGATTTTCCGCTT 179338 || || || || |||||||||| ||| ||||| || || || || || || || Sbjct 24109966 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 24110025 Query 179339 CCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCAACCCGTTCCACATGATGGGTGT 179398 | | ||||| | || || || || || ||| | || || | || || || |||| | Sbjct 24110026 CATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGCTGGGAAT 24110085 Query 179399 AGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCCATTCATGGTGCTACAGTAGAGA-ACA 179457 || ||| | ||||||| || || | || || ||| |||||||||| ||||| | | Sbjct 24110086 TGCCGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGAAATATT 24110145 Query 179458 CACTCTTTGAAGACAGTGACCAATCAAATACATTCAAGGCATTCGAGCCTACACAAGAAG 179517 | | |||| | |||| |||||| ||| || || | || | |||| | Sbjct 24110146 TTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCCG 24110205 Query 179518 AGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTCTCAGATCTTTGGTATCGCCT 179577 | || || ||||| ||||| || || ||||| || ||||| | |||||||| || | Sbjct 24110206 AAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCTT 24110265 Query 179578 TCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGA 179637 | |||||| | |||| |||| ||||||||||| ||||| || || | ||| | ||| Sbjct 24110266 TTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGGA 24110325 Query 179638 CCTCTAGCATTGGTATTA-TTGGTCTTGCACTTAACCTTAGAGCTTATGACTTTGTTTCA 179696 | || | ||| || | ||||| || | ||||| | || |||| ||| |||| Sbjct 24110326 TGAGT-GCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCC 24110384 Query 179697 CAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAGAACATCCTA 179756 ||||| || | || || || ||||| || || || || ||||| || || || || || Sbjct 24110385 CAAGAAATTTGTGCAGCGGAAGATCCGGACTT-GAAACTTTCTACACTAAAAATATTCTT 24110443 Query 179757 TTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTCGAT---CAACCACATGAAAACTTT 179813 || || |||||| | || |||||||||| | ||| || || ||||||||| || Sbjct 24110444 TTAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATT 24110503 Query 179814 GTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 179851 |||| |||| || || || ||| | || | | |||| Sbjct 24110504 ATATTCACTGAGGAGGTTTTACCACGTGGAAGCACTCT 24110541 >seq4 Length=32756842 Score = 158 bits (174), Expect = 1e-33 Identities = 207/287 (72%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 177925 TACATGGGTCGTGAGTGGGAACTTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTA 177984 || |||| |||||| ||||||||| || | | || ||||| |||| ||||| ||| Sbjct 25315233 TATATGGATCGTGATTGGGAACTTAGTTTCTGTCTGGGTATACGTCTTTGGATTGCTGTT 25315174 Query 177985 GCATACTCTGCTCCAGTCGCCGCAGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTCAA 178044 ||||| || ||| | || || | |||||| ||| | | || || | |||||| Sbjct 25315173 GCATATTCAGCTTCTGTTGCAATTGTTATTGCTGTTTTCTTGATCTACCCAATTGGTCAA 25315114 Query 178045 GGTTCTTTCTCTGACGCTATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTC 178104 || ||| ||| | | |||||| || || ||| ||| || ||||||| ||| |||| Sbjct 25315113 GGAAGTTTTTCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTA 25315054 Query 178105 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGTC 178164 || ||||| ||||||||||| || |||||||| || |||||||| || || |||||||| Sbjct 25315053 TTTCAAGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 25314994 Query 178165 TTTGGTGGTTCTCTGTTCAGTGCGATGCACGGTTCTCTGGTTACTTC 178211 || || || | || || ||||| ||||| |||| |||| | ||| Sbjct 25314993 TTCGGCGGCTTCCTATTTAGTGCTATGCATAGTTCCTTGGTAATTTC 25314947 >seq8 Length=44809562 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 176152 TTGAGTGTGCTGACGATCAGTATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCA 176211 ||||||| | ||||| || | || || |||||||||||||| ||| | || | Sbjct 31673085 TTGAGTGCGACGACGACGTCTACGTCCTCGACGCTGCTGAGGAAGCCGGAATCGACTTGC 31673026 Query 176212 ACTACTCGTGCCGCGCTGGTGCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGG 176271 ||||| ||||| |||||| | || || || |||||||| ||| | | || || | | Sbjct 31673025 CTTACTCTTGCCGTGCTGGTTCTTGCTCCAGCTGTGCAGGTAAAGTTGTGTCTGGATCTG 31672966 Query 176272 TAGATCAAAGCGATCAATCGTTCCTTGATGATGACCAGATCGATGCAGGTTTCATTCTGA 176331 | || || || || ||||| |||||||||||||| | || ||| ||| |||| | Sbjct 31672965 TTGACCAGTCTGACCAGAGTTTCCTCGATGATGACCAGATTGCTGAAGGATTCGTTCTCA 31672906 Query 176332 CTTGTGTTTCATATCCTACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGA 176386 |||||| | |||||||| ||| | |||||||| | | |||||| || Sbjct 31672905 CTTGTGCGGCTTATCCTACTTCTGATGTTACCATTGAGACCCACAGAGAAGAAGA 31672851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596288229977200