Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq3 266 4e-66 seq4 158 1e-33 seq7 102 1e-16 >seq3 Length=44396707 Score = 266 bits (294), Expect = 4e-66 Identities = 440/629 (70%), Gaps = 7/629 (1%) Strand=Plus/Plus Query 170975 CAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTCCTCATCTATCC 171034 |||| ||||| | ||||||||||| || ||||| ||||| || || || || ||||| Sbjct 24109906 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 24109965 Query 171035 TCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCAATCTTCCGCTT 171094 || || || || ||||||||| | ||| ||||| || || || || || || || Sbjct 24109966 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 24110025 Query 171095 CCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGT 171154 | | ||||| | ||||| || || || ||| |||||||| |||||||| || |||| | Sbjct 24110026 CATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGCTGGGAAT 24110085 Query 171155 TGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTACAGTAGAGAATAC 171214 ||| ||| | || |||| || || | | || ||| |||||| ||| ||||| |||| Sbjct 24110086 TGCCGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGA-AATAT 24110144 Query 171215 TTTGTA--TGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGACACGACTCAGGAG 171272 ||| || |||| |||||||| ||||| | || || ||| || | | ||| | Sbjct 24110145 TTTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCC 24110204 Query 171273 GAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTTTGGTATCGCG 171332 ||||| || ||||| |||||||| ||||| || || ||||| | || ||||| || Sbjct 24110205 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCT 24110264 Query 171333 TTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCATGGGTCTTTGG 171392 || |||||| | |||||| || ||||||||| | ||||| || || | ||| | || Sbjct 24110265 TTTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGG 24110324 Query 171393 GTCAGTAGTCTGGGGATTATTGGTCTTGCTCTTAATCTTAGGGCTTATGATTTCGTAAGT 171452 | ||| ||| | || | ||||| ||| | || || | || |||| ||| | Sbjct 24110325 ATGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCC 24110384 Query 171453 CAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGAGACGTTCTATACCAAGAACATCCTA 171512 || || | | ||||| |||||||| || || || || ||||| || || || || || Sbjct 24110385 CAAGAAATTTGTGCAGCGGAAGATCCGGACTT-GAAACTTTCTACACTAAAAATATTCTT 24110443 Query 171513 TTGAATGAAGGTCTTCGTGCATGGATGGC--ACCAGTA-GACCAACCACATGAAAACTTT 171569 || || |||||| |||| | |||||||| ||| | | || || ||||||||| || Sbjct 24110444 TTAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATT 24110503 Query 171570 GTGTTCCCAGAGGAAGTTCTACCTCGTGG 171598 | ||| | ||||| ||| |||| ||||| Sbjct 24110504 ATATTCACTGAGGAGGTTTTACCACGTGG 24110532 >seq4 Length=32756842 Score = 158 bits (174), Expect = 1e-33 Identities = 199/271 (73%), Gaps = 2/271 (1%) Strand=Plus/Minus Query 169678 TTACATGGGTCGTGAGTGGGAATTGTCCTATC-GTCTGGGTATGCGCCCTTGGATCTGTG 169736 ||| |||| |||||| |||||| | | | || |||||||||| || | |||||| || Sbjct 25315234 TTATATGGATCGTGATTGGGAACT-TAGTTTCTGTCTGGGTATACGTCTTTGGATTGCTG 25315176 Query 169737 TTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGGC 169796 |||| || || ||| | ||||| | ||||||||| || ||||||| |||| | Sbjct 25315175 TTGCATATTCAGCTTCTGTTGCAATTGTTATTGCTGTTTTCTTGATCTACCCAATTGGTC 25315116 Query 169797 AAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATCTCGGGAACCTTTAACTACATGCTGG 169856 |||| || ||| | | ||||||||| || ||||| || || || |||| ||| | | Sbjct 25315115 AAGGAAGTTTTTCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTG 25315056 Query 169857 TCTTCCAAGCTGAGCACAACATCCTCATGCACCCCTTCCACATGCTTGGTGTTGCGGGAG 169916 | || ||||||||||||||||| || |||||||| || |||||| | ||||| || || | Sbjct 25315055 TATTTCAAGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 25314996 Query 169917 TGTTTGGTGGGTCTCTGTTTAGCGCGATGCA 169947 | || || || | || ||||| || ||||| Sbjct 25314995 TATTCGGCGGCTTCCTATTTAGTGCTATGCA 25314965 >seq7 Length=41685129 Score = 102 bits (112), Expect = 1e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 167448 TACATCCTTGACGCGGCTGAGGAAGCGGGTGTGGACATCAACTACTCGTGCCGTGCAGGC 167507 ||| |||| ||||| || |||||||||||| | || | |||||| |||||||| || Sbjct 40487261 TACGTCCTCGACGCCGCGGAGGAAGCGGGTATCGATCTGCCCTACTCATGCCGTGCGGGA 40487202 Query 167508 GCTTGTTCGTCGTGCGCGGGAAAACTCATCTCTGGCACCGTAGATCAAAGCGATCAATCC 167567 |||| ||| ||||| || ||| || |||||||| || | || || | || || | Sbjct 40487201 TCTTGCTCGAGCTGCGCCGGGAAAGTCGTCTCTGGCTCCATTGACCAGACGGACCAGAGC 40487142 Query 167568 TTCCTGGACGATGATCAAATTGCCGAAGGTTTCCTTCTCACCTGTGTGTCCTATCCAAC 167626 ||| |||| ||||| || || | ||| || | | |||||||||||| | || ||||| Sbjct 40487141 TTCTTGGATGATGACCAGATGGGCGAGGGGTATGTCCTCACCTGTGTGGCTTACCCAAC 40487083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592179560688400