Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq7 118 1e-21 >seq7 Length=48366697 Score = 118 bits (130), Expect = 1e-21 Identities = 383/585 (65%), Gaps = 11/585 (2%) Strand=Plus/Plus Query 16958 ATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAAT 17017 ||||| || ||||||||||| || || || ||||||| | ||| | ||||| || || Sbjct 33023932 ATCAGGCAGGCGAAATCGCAGTGCAAGCCTTCGTCTCGGGAGATCAACTCGTTGGAGAAG 33023991 Query 17018 GTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAA 17077 || ||||| ||||| ||||| ||||| | ||| || |||| | ||| || || Sbjct 33023992 GTTAACCCAGGCATGAGCCCTCGCTTCTTAAGCCAGAAGATCGAGCAGAAGCTACCGGAG 33024051 Query 17078 AAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTC-GCG-TCTT 17135 ||||| || || |||||| | || || |||| | | |||||| | ||| | | || Sbjct 33024052 AAGAAGATCCCTTCGACGCAAGCGAAGGCGACGATCCTCTCGGCGAAAGTCTGAGATCCA 33024111 Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195 | || ||||| || |||| | ||| || | | | |||| || ||||| | Sbjct 33024112 T----CG-ATCCACGTCATGGCCCATTGGGCCTTCTTCGCGACGCAAGGGATGGTTTCAA 33024166 Query 17196 TGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGC 17255 | || || | | || | |||| ||| | || ||||| |||| || |||| Sbjct 33024167 TCGCGCGGAAAAGGTGGTCCCTCTCCTTGTTGTCCTTGATGTACGTGTCGAGCAGGAGGC 33024226 Query 17256 TGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTT 17315 ||||||| || ||||| || ||||| || || ||||| || ||||| ||| || || | Sbjct 33024227 TGTACATCTCTGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAGGCACGCGCCT 33024286 Query 17316 CCGCTATTTGAACTTC-CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 | | | ||| || || || | ||| || || ||||| || ||||| ||||| Sbjct 33024287 CGGAGACTTGCACGTCGGACAT-GAACCGCGAGGCGAGATTCTCCAAAACGATTCCGTCT 33024345 Query 17375 CTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTG-TAAGAAC 17433 |||||||| || || | | || || ||||| | | || |||| | | ||| Sbjct 33024346 GAGGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGTCGCTC-TCCGTCGTTGAGATT 33024404 Query 17434 GCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCAC 17493 |||||| |||| ||| | || |||||||||| |||||| ||| || | Sbjct 33024405 CTCCCAGTCGCGATTGTCTTGGGAGAGGTCGACTTCTTCGGCGGTCCAGAAAGAGGCTTC 33024464 Query 17494 TGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 ||||| || ||||| | ||| || | |||||| || ||||| Sbjct 33024465 GGCCTTCTTGTACATCTCCCAGATCTGCGGGTATTGGATCGGGAA 33024509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517332849942480