Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq7 98.7 8e-16 seq1 95.1 1e-14 >seq7 Length=48366697 Score = 98.7 bits (108), Expect = 8e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031 |||| ||| ||||| || |||| ||| ||||||| ||||||||||| || | || Sbjct 46712539 ATGGCACTTCCTCCTTGCCACATGTTTGCACAGTTTTTTGTTGCAAACGGAGAGCTTTCG 46712480 Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091 || ||| | || ||| | || | |||||||| ||||| |||||||| |||||||| | Sbjct 46712479 TGTCAAATGTATCAGCGGTCAGCAGATATGGGTCTTGGTGTACCGTTTAACATTGCCTCA 46712420 Query 19092 TATGCACTTCTTACCTACATAGTAGCGCATGT 19123 || |||||||| | | ||| |||| ||||| Sbjct 46712419 TACTCACTTCTTTCATGCATCCTAGCTCATGT 46712388 >seq1 Length=43764888 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031 |||| ||| |||||||| |||| ||| |||||||||||||||||| || || | || Sbjct 2358916 ATGGCACTTCCTCCATGCCACATGTTTGCTCAGTTTTACGTTGCAAATGGAGAGCTTTCA 2358975 Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091 || ||| | || ||| | || | |||||||| ||||| |||||||| ||||| || Sbjct 2358976 TGTCAAATGTATCAGCGCTCAGCTGATATGGGTCTTGGTGTACCGTTTAACATCGCCTCG 2359035 Query 19092 TATGCACTTCTTACCTACATAGTAGCGCATGT 19123 || | |||||||| | || | || ||||| Sbjct 2359036 TACTCCCTTCTTACATGTATCCTCGCTCATGT 2359067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399343879545870