Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq1 82.4 6e-11 >seq1 Length=43764888 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/217 (69%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 101755 GACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAA 101814 ||||||||| | || || || | ||| || || || |||||||| || || || | Sbjct 2359068 GACATGAGCGAGGATACATGTAAGAAGGGAGTACGAGGCGATGTTAAACGGTACACCAAG 2359009 Query 101815 CCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAA 101874 |||||||||||||| | ||||||| |||||| ||||||| ||||| || ||||| Sbjct 2359008 ACCCATATCAGCTGAGCGCTGATACATTTGACATGAAAGCTCTCCATTTGCAACGTAAAA 2358949 Query 101875 TTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGC 101934 ||| || | || || || || | |||| || ||| ||| ||||||||| Sbjct 2358948 CTGAGCAAACATGTGGCATGGAGGAAGTGCCATCGCCTTAAGGTCAGAAGGATTCCAAGC 2358889 Query 101935 ACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTT 101971 |||||| |||| | ||| || || ||||| || Sbjct 2358888 CGACATTATAATCCGCCGATC-GTCAGGATTGTTCTT 2358853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361106411196386