Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq7 109 7e-19 seq3 100 3e-16 >seq7 Length=48366697 Score = 109 bits (120), Expect = 7e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 |||||| | ||||| | ||| ||||| || || || |||||| | ||| | || || Sbjct 27689544 AGTTCCAGAGTTAAAGAGGGTGGGAGATGCATGAGTGAACCATCGCTGAGACATTAAATG 27689485 Query 54484 GTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 54543 ||| |||| || |||||| || |||||| || |||||| || || | || | ||| | Sbjct 27689484 GTAAGTCTGGACAGCTGAATCAATATCCTGTTTATGAATGCCAACAGAAACTCTCATGAG 27689425 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 |||||||||||| |||||||| | || | | ||| | | ||| ||| |||| | Sbjct 27689424 CATGTGCTGAGGCCTTTCAACCACTTTCCCATGGACTTTTAAAAGGTATGATCTTTCAAG 27689365 Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||| || ||||| || |||| ||| || || || |||||||| || Sbjct 27689364 AGTCTTGAAACCGAAGTAGTCATATTCGAAATCGCGGTCGTAAATGAT 27689317 >seq3 Length=64984695 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 |||||| | ||| || | || |||||||| || ||||||||| | ||| | || || Sbjct 53582562 AGTTCCTGAATTGAAGAGAGTCGGAGAAGCATGAGTAAACCATCGCTGAGACATTAAATG 53582621 Query 54484 GTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 54543 ||| || | ||| || || || ||||| || ||||| || || | || | ||| | Sbjct 53582622 GTAAGTTTTGATTGCGGAATCAATATCTTCTTTGTGAATGCCAACAGAAACCCTCATGAG 53582681 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 ||||||||||||||| ||||| | || | | ||| | | ||| ||| | || | Sbjct 53582682 CATGTGCTGAGGTCTCTCAACCACTTTCCCATGGACTTTTAAGAGGTATGATCTCTCAAG 53582741 Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 |||||| || ||||| |||| |||| ||| || || || ||||| || Sbjct 53582742 AGTTTTGAACCCAAAGTAGTCGTATTCAAAATCACGATCATAAATGAT 53582789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593477535893280