Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq9 93.3 4e-14 seq1 91.5 1e-13 seq4 86.0 5e-12 >seq9 Length=54679868 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||||||||| | || || ||||| ||||| || || ||| ||| || | | Sbjct 53991730 AATGCAAATATTTGTGAAGACTTTGACAGGCAAGACTATAACCTTGGAAGTTGAGAGCTC 53991789 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| ||| | | | || | ||| || ||| || || ||||| | || || || Sbjct 53991790 AGACACGATAGACAATGTCAAGGCTAAGATTCAGGACAAGGAAGGGATCCCTCCGGACCA 53991849 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| ||||| ||||| || || ||||| || || ||| | ||| |||| |||||||| Sbjct 53991850 ACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTAGGACTTTGGCTGATTACAA 53991909 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTG 29171 || |||||||| || ||||||||| | ||| Sbjct 53991910 CATCCAGAAGGAGTCGACTCTTCACCTTGTG 53991940 >seq1 Length=43764888 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 || || || || ||||||||||| || || ||| |||||||| || || |||||||| Sbjct 35467125 GACCAGCAGAGGCTTATCTTTGCTGGAAAGCAATTGGAAGATGGCAGGACCTTGGCCGAT 35467184 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||||| ||||||||||| ||||| |||||| |||| Sbjct 35467185 TACAACATTCAGAAGGAGTCTACGCTTCACTTGGT 35467219 >seq4 Length=53719093 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||||||| | || |||||| ||||| || ||||| || || || || || ||| Sbjct 8022755 GACAAAGAAGGTATTCCACCAGATCAGCAAAGGCTCATCTTCGCCGGTAAGCAGCTTGAA 8022696 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 ||| || ||| |||| |||||||| || ||||| || ||||||||||| Sbjct 8022695 GATGGCAGAACCCTGGCGGATTACAACATCCAGAAAGAGTCTACTCTTCA 8022646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428164323734330