Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_
202014-05-27] 32,886 sequences; 488,954,160 total letters
Query= NC_001962.1
Length=128413
Score E
Sequences producing significant alignments: (Bits) Value
seq1 91.5 1e-13
seq9 87.8 1e-12
>seq1
Length=43764888
Score = 91.5 bits (100), Expect = 1e-13
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208
|| || || || ||||||||||| || || |||||||||||| || || ||||||||
Sbjct 35467125 GACCAGCAGAGGCTTATCTTTGCTGGAAAGCAATTGGAAGATGGCAGGACCTTGGCCGAT 35467184
Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243
||||| ||||| ||||| ||||| |||||| ||||
Sbjct 35467185 TACAACATTCAGAAGGAGTCTACGCTTCACTTGGT 35467219
>seq9
Length=54679868
Score = 87.8 bits (96), Expect = 1e-12
Identities = 146/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093
|||||||||||| | || || ||||| ||||| || || ||| ||| || | |
Sbjct 53991730 AATGCAAATATTTGTGAAGACTTTGACAGGCAAGACTATAACCTTGGAAGTTGAGAGCTC 53991789
Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153
||| ||| | | | || ||||| || ||| || || ||||| | || || ||
Sbjct 53991790 AGACACGATAGACAATGTCAAGGCTAAGATTCAGGACAAGGAAGGGATCCCTCCGGACCA 53991849
Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213
||| ||||| ||||| || || ||||| | || ||| | ||| |||| ||||||||
Sbjct 53991850 ACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTAGGACTTTGGCTGATTACAA 53991909
Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTG 25244
|| || ||||| || ||||||||| | |||
Sbjct 53991910 CATCCAGAAGGAGTCGACTCTTCACCTTGTG 53991940
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 410632153412804
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |