Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1 109 8e-19 seq8 104 4e-17 seq3 91.5 2e-13 seq9 86.0 9e-12 >seq1 Length=43764888 Score = 109 bits (120), Expect = 8e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||||||||| | ||||| | || || || || || ||| | ||| ||||| Sbjct 35466783 ATGCAAATATTCGTTAAGACGTTGACGGGAAAGACGATCACTTTGGAGGTTGAAAGCTCC 35466842 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| || || ||||| ||||| ||||| ||||| || || Sbjct 35466843 GACACTATTGACAATGTCAAAGCCAAGATCCAAGACAAAGAGGGTATCCCACCAGACCAG 35466902 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || ||||| ||||| || | |||||| |||| || || | |||||| || Sbjct 35466903 CAGAGGTTGATCTTTGCTGGAAAGCAGCTCGAGGATGGTCGCACCTTGGCAGATTACAAC 35466962 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||| ||| | || ||||| | ||| |||| || || || Sbjct 35466963 ATCCAGAAGGAATCTACTCTTCACTTGGTCCTGCGTCTACGTGGAGGCAT 35467012 >seq8 Length=41758685 Score = 104 bits (114), Expect = 4e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || ||||| || ||||||||||||||||| ||||| || ||||| || |||||| | Sbjct 10683336 CAGGACAAAGAGGGGATACCACCTGATCAACAGAGGCTCATCTTTGCTGGGAAACAACTT 10683395 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 |||||| ||||||| ||| || || || ||||| ||||| || ||| | || |||||| Sbjct 10683396 GAGGATGGTCGAACGCTAGCTGACTACAACATTCAGAAAGAGTCCACTCTTCACTTGGTT 10683455 >seq3 Length=64984695 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| ||||||| || || || ||| ||||| | || Sbjct 11141559 ATGCAAATCTTCGTGAAGACTTTAACAGGAAAGACGATCACTCTAGAGGTGGAGAGTTCC 11141500 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | ||| ||||| || || ||||| ||||| || || || || Sbjct 11141499 GACACCATTGACAACGTGAAAGCCAAAATCCAGGACAAAGAGGGTATTCCTCCGGACCAG 11141440 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || || || || ||||| | |||||| |||| || || | || ||||| Sbjct 11141439 CAGCGTCTCATCTTCGCTGGCAAACAGCTTGAGGATGGTCGTACTTTGGCTGACTATAAC 11141380 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||||||| | || ||||| | | | || |||||||| Sbjct 11141379 ATCCAGAAAGAATCAACTCTTCACTTGGTGCTCAGGCTCCGTGGTGGTAT 11141330 >seq9 Length=54679868 Score = 86.0 bits (94), Expect = 9e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||||||| | ||||| | |||||||| |||||||| | || |||| ||| Sbjct 53991730 AATGCAAATATTTGTGAAGACTTTGACAGGCAAGACTATAACCTTGGAAGTTGAGAGCTC 53991789 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 | || || || ||| | || || ||||| || || ||||| || || || || | Sbjct 53991790 A-GACACGATAGACAATGTCAAGGCTAAGATTCAGGACAAGGAAGGGATCCCTCCGGACC 53991848 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 |||| || || || || || || ||||| | |||||| || | || || | ||||| | Sbjct 53991849 AACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTAGGACTTTGGCTGATTACA 53991908 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 | || || || || || ||| | || | || | ||| | || ||||| Sbjct 53991909 ACATCCAGAAGGAGTCGACTCTTCACCTTGTGCTGCGTCTTCGTGGTGG 53991957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755145450924800