Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq1 84.2 2e-11 >seq1 Length=43764888 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 20401 ATGGCTTTGCCTCCATGTCATATGCTATGC-CAATTTTACGTTGCTAATAATGAATTGTC 20459 ||||| | |||||||| || ||| | ||| || ||||||||||| ||| || | || Sbjct 2358916 ATGGCACTTCCTCCATGCCACATGTT-TGCTCAGTTTTACGTTGCAAATGGAGAGCTTTC 2358974 Query 20460 GTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAG 20519 |||||||||||||| || || ||||||||||| || ||||| || || || || || Sbjct 2358975 ATGTCAAATGTATCAGCGCTCAGCTGATATGGGTCTTGGTGTACCGTTTAACATCGCCTC 2359034 Query 20520 TTATGCGCTGCTTACGTATATGATTGCACATGT 20552 || | || ||||| | ||| | || ||||| Sbjct 2359035 GTACTCCCTTCTTACATGTATCCTCGCTCATGT 2359067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399024007801270