Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1 111 3e-19 seq3 107 4e-18 >seq1 Length=43764888 Score = 111 bits (122), Expect = 3e-19 Identities = 178/251 (71%), Gaps = 6/251 (2%) Strand=Plus/Plus Query 35465 GATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAA-AA 35523 ||||||||||| | || ||||||| | | || || | || | | | |||| || Sbjct 2358802 GATTATACTGGCCAAGGATTTGATCAGCTCTCAGATGTAATTAACAAGATCA-AGAACAA 2358860 Query 35524 TCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGC 35583 ||| || ||| | |||| || ||| |||| ||||||||| || ||| | ||||| Sbjct 2358861 TCCTGACGATCGGCGGATTATAATGTCGGCTTGGAATCCTTCTGACCTTAAGGCGATGGC 2358920 Query 35584 TCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCA 35643 |||||||||||||||||| |||||| ||||| || || |||||||| | || || || Sbjct 2358921 ACTTCCTCCATGCCACATGTTTGCTCAGTTTTACGTTGCAAATGGAGAGCTTTCATGTCA 2358980 Query 35644 GTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATAC 35701 |||||||||| ||| || ||| || | || || || || || || || || ||| Sbjct 2358981 AATGTATCAGCGCTCAGCTGATATG--GGTCTTGGTGTACCGTTTAACATCGCCTCGTAC 2359038 Query 35702 TCTCTTCTGAC 35712 || ||||| || Sbjct 2359039 TCCCTTCTTAC 2359049 >seq3 Length=64984695 Score = 107 bits (118), Expect = 4e-18 Identities = 145/199 (73%), Gaps = 5/199 (3%) Strand=Plus/Minus Query 35518 AGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACC 35576 |||| ||||| |||||| | | || || | | || ||||| ||| ||||| | | Sbjct 32924840 AGAACAATCCTGATGATCGGCGTATCATATTATCTGCTTGGAACCCTTCTGATCTCAAGC 32924781 Query 35577 TTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGT 35636 | ||||| |||||||| ||||||||| ||| || || |||||||| | || || | | Sbjct 32924780 TGATGGCGCTTCCTCCGTGCCACATGTTTGCGCAGTTCTATGTGGCGGAAGGGGAGCTCT 32924721 Query 35637 CGTGCCAGTTGTATCAGCGAA--GCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 |||||||| |||||||||| ||||| ||| || | || ||||| || || || || Sbjct 32924720 CGTGCCAGATGTATCAGCGTTCGGCGGATATG--GGCCTTGGTGTGCCGTTTAACATCGC 32924663 Query 35695 ATCATACTCTCTTCTGACT 35713 || ||||||||||| ||| Sbjct 32924662 TTCCTACTCTCTTCTTACT 32924644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989167036926130