Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq7 143 3e-29 seq3 105 8e-18 >seq7 Length=48366697 Score = 143 bits (158), Expect = 3e-29 Identities = 402/608 (66%), Gaps = 12/608 (2%) Strand=Plus/Plus Query 33576 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAAC 33635 |||| || |||||||||||||||| || ||||||| || || ||||| || || Sbjct 33023932 ATCAGGCAGGCGAAATCGCAGTGCAAGCCTTCGTCTCGGGAGATCAACTCGTTGGAGAAG 33023991 Query 33636 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAA 33695 || | || ||||| || || ||||| |||||||| || || || ||| ||||| Sbjct 33023992 GTTAACCCAGGCATGAGCCCTCGCTTCTTAAGCCAGAAGATCGAGCAGAAGCTACCGGAG 33024051 Query 33696 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC-TCCATAACCGGCGCTGTC 33754 |||||||| ||||| || ||| ||||| | | ||||| | | | | | | | | Sbjct 33024052 AAGAAGATCCCTTCGACGCAAGCGAAGGCGACGATCCTCTCGGCGAAAGTCTGAGAT-CC 33024110 Query 33755 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814 || |||||| | ||||| | ||||||||| || ||||| || ||||| || || Sbjct 33024111 ATCGATCCACGTCATGGCCCATTGGGCCTTCTTCGCGACGCAAGGGATGGTTTCAATCGC 33024170 Query 33815 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33874 || || | || | || || | || || | || || |||| || || || || Sbjct 33024171 GCGGAAAAGGTGGTCCCTCTCCTTGTTGTCCTTGATGTACGTGTCGAGCAGGAGGCTGTA 33024230 Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33934 ||| || || || || || ||||| || ||||| || |||||||| | ||||||| Sbjct 33024231 CATCTCTGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAGGCACGCGCCTCGGA 33024290 Query 33935 AATCTGCACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGG 33993 | ||||| || | ||| || || || | ||| || || ||||| || || Sbjct 33024291 GACTTGCACGTC-GGACATGAACCGCGAGGCGAGATTCTCCAAAACGATTCCGTCTGAGG 33024349 Query 33994 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTC 34052 | || || || || | || ||||| || || | | || || | ||| || || | | Sbjct 33024350 CGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGTCGCTC-TCCGTCGTTGAGATTCTCC 33024408 Query 34053 CAATC---ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 34109 || || |||| |||| || | || |||||||| | ||||| || || || || Sbjct 33024409 CAGTCGCGATTG---TCTTGGGAGAGGTCGACTTCTTCGGCGGTCCAGAAAGAGGCTTCG 33024465 Query 34110 GCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTT 34169 ||||| || ||||| | |||||| | | |||||||| ||||| || ||||| | | Sbjct 33024466 GCCTTCTTGTACATCTCCCAGATCTGCGGGTATTGGATCGGGAACATGCAGAATCTGTCT 33024525 Query 34170 GGATTTGG 34177 || |||| Sbjct 33024526 GGGGTTGG 33024533 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||| | ||||| | ||| ||||| || || || |||||| | ||| | || || Sbjct 27689544 AGTTCCAGAGTTAAAGAGGGTGGGAGATGCATGAGTGAACCATCGCTGAGACATTAAATG 27689485 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 ||| |||| | |||||| || |||||| || |||||| || || | || | ||| | Sbjct 27689484 GTAAGTCTGGACAGCTGAATCAATATCCTGTTTATGAATGCCAACAGAAACTCTCATGAG 27689425 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 |||||||||||| |||||||| | ||| | | ||| || | ||| ||| |||| | Sbjct 27689424 CATGTGCTGAGGCCTTTCAACCACTTTCCCATGGACTTTTAAAAGGTATGATCTTTCAAG 27689365 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAt 63889 ||| || ||||| || |||| ||| || || || |||||||| || Sbjct 27689364 AGTCTTGAAACCGAAGTAGTCATATTCGAAATCGCGGTCGTAAATGAT 27689317 >seq3 Length=64984695 Score = 105 bits (116), Expect = 8e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||| | ||| || | || |||||||| || ||||||||| | ||| | || || Sbjct 53582562 AGTTCCTGAATTGAAGAGAGTCGGAGAAGCATGAGTAAACCATCGCTGAGACATTAAATG 53582621 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 ||| || | || || || || ||||| || ||||| || || | || | ||| | Sbjct 53582622 GTAAGTTTTGATTGCGGAATCAATATCTTCTTTGTGAATGCCAACAGAAACCCTCATGAG 53582681 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 ||||||||||||||| ||||| | ||| | | ||| || | ||| ||| | || | Sbjct 53582682 CATGTGCTGAGGTCTCTCAACCACTTTCCCATGGACTTTTAAGAGGTATGATCTCTCAAG 53582741 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAt 63889 |||||| || ||||| |||| |||| ||| || || || ||||| || Sbjct 53582742 AGTTTTGAACCCAAAGTAGTCGTATTCAAAATCACGATCATAAATGAT 53582789 Score = 86.0 bits (94), Expect = 8e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| || || | ||| | ||| || | ||| |||| | || |||||||| |||||| Sbjct 53582236 TCCTCCTTGGTCAACGTAGCGAGCAGTATCATTGAAAACACGCAGCATTGGAAGAATACC 53582295 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 || ||| | ||||| || || || || | |||| | ||||| || || || ||| Sbjct 53582296 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGA 53582355 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | ||| || ||||| || |||| || | || || ||| || || ||||| || Sbjct 53582356 AACACCGATACCCCCAGCTGATTTACTTATAACAGCACACTCTTTCAAGGTATCATATAT 53582415 Query 63602 GCCTTCTATGCTATCATCGATCATG 63626 || || ||||||||||| ||||| Sbjct 53582416 TCCCTCGATGCTATCATCCTTCATG 53582440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629558697730080