Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq3 116 3e-21 seq1 105 6e-18 seq7 82.4 7e-11 >seq3 Length=64984695 Score = 116 bits (128), Expect = 3e-21 Identities = 148/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 21000 ACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGG 21059 |||||||||| || | || || || | |||| |||||||||||||| || || ||| Sbjct 32924627 ACGTGAGCGAGCATGCAAGTAAGAAGAGAGTAGGAAGCGATGTTAAACGGCACACCAAGG 32924686 Query 21060 CCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAAC 21119 ||||| || || || | ||| |||| |||||| || |||||||| ||||| || ||| Sbjct 32924687 CCCATATCCGCCGAACGCTGATACATCTGGCACGAGAGCTCCCCTTCCGCCACATAGAAC 32924746 Query 21120 TGACACAAA-ACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGC 21178 || | |||| | ||| || ||||| || |||||| || ||| || | |||||||| || Sbjct 32924747 TG-CGCAAACATGTGGCACGGAGGAAGCGCCATCAGCTTGAGATCAGAAGGGTTCCAAGC 32924805 Query 21179 GCACATAACGATGCGCCGATC 21199 | | | ||| |||||||| Sbjct 32924806 AGATAATATGATACGCCGATC 32924826 >seq1 Length=43764888 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20999 GACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAG 21058 ||| ||||||| | | | || || |||| ||| ||||||||||||||| || || || Sbjct 2359068 GACATGAGCGAGGATACATGTAAGAAGGGAGTACGAGGCGATGTTAAACGGTACACCAAG 2359009 Query 21059 GCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAA 21118 ||||| || || || | ||| |||| || || || ||||| || || |||||||| Sbjct 2359008 ACCCATATCAGCTGAGCGCTGATACATTTGACATGAAAGCTCTCCATTTGCAACGTAAAA 2358949 Query 21119 CTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGC 21178 |||| || | ||| || ||||| || |||||| | ||||| | || ||||| || Sbjct 2358948 CTGAGCAAACATGTGGCATGGAGGAAGTGCCATCGCCTTAAGGTCAGAAGGATTCCAAGC 2358889 Query 21179 GCACATAACGATGCGCCGATCGT 21201 |||| | || |||||||||| Sbjct 2358888 CGACATTATAATCCGCCGATCGT 2358866 >seq7 Length=48366697 Score = 82.4 bits (90), Expect = 7e-11 Identities = 117/165 (71%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 21035 GGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGA 21094 ||| ||||||||||| || || || ||||| || || |||| ||| |||| || || || Sbjct 46712423 GGCAATGTTAAACGGTACACCAAGACCCATATCTGCTGACCGCTGATACATTTGACACGA 46712482 Query 21095 CAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCG 21154 ||||| || || || ||||||| || | ||| |||||||| || |||||| | Sbjct 46712483 AAGCTCTCCGTTTGCAACAAAAAACTGTGCAAACATGTGGCAAGGAGGAAGTGCCATCAG 46712542 Query 21155 CGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCGATC 21199 | ||||| | || ||||| || |||| | || || ||||| Sbjct 46712543 CTTAAGGTCAGAAGGATTCCAAGCTGACATTATAATCCGGCGATC 46712587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427604548181280