Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq7 141 1e-28 seq3 109 8e-19 >seq7 Length=48366697 Score = 141 bits (156), Expect = 1e-28 Identities = 404/609 (66%), Gaps = 14/609 (2%) Strand=Plus/Plus Query 49954 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 50013 |||| || |||||||||||||||| || ||||||| || | |||||||| || Sbjct 33023932 ATCAGGCAGGCGAAATCGCAGTGCAAGCCTTCGTCTCGGGAGATCAACTCGTTGGAGAAG 33023991 Query 50014 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGA 50072 || | || ||||| || || ||||| |||||||| || || || ||| || || || Sbjct 33023992 GTTAACCCAGGCATGAGCCCTCGCTTCTTAAGCCAGAAGATCGA-GCAGAAGCTACCGGA 33024050 Query 50073 AAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACT-GGCGCTGT 50131 |||||||| ||||| || || ||||| || | ||||| | || | | | | Sbjct 33024051 GAAGAAGATCCCTTCGACGCAAGCGAAGGCGACGATCCTCTCGGCGAAAGTCTGAGAT-C 33024109 Query 50132 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 50191 ||| |||||| | ||||| | ||||||||| || ||||| || ||||| || | Sbjct 33024110 CATCGATCCACGTCATGGCCCATTGGGCCTTCTTCGCGACGCAAGGGATGGTTTCAATCG 33024169 Query 50192 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 50251 | || || | || | || || | || || | || || |||| || || || | Sbjct 33024170 CGCGGAAAAGGTGGTCCCTCTCCTTGTTGTCCTTGATGTACGTGTCGAGCAGGAGGCTGT 33024229 Query 50252 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 50311 |||| || || || || || ||||| || ||||| || |||||||| | ||||||| Sbjct 33024230 ACATCTCTGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAGGCACGCGCCTCGG 33024289 Query 50312 TAATCTGCACTTCTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTG 50370 | ||||| || | ||| || || || | ||| || || |||||||| | Sbjct 33024290 AGACTTGCACGTC-GGACATGAACCGCGAGGCGAGATTCTCCAAAACGATTCCGTCTGAG 33024348 Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT-AGTTTATT 50429 || || || || || | || ||||| || || ||| || | | ||| || || | Sbjct 33024349 GCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGTCGCTC-TCCGTCGTTGAGATTCTC 33024407 Query 50430 CCAATC---ATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTC 50486 ||| || |||| |||| || | || |||||||| | ||||| || || || || Sbjct 33024408 CCAGTCGCGATTG---TCTTGGGAGAGGTCGACTTCTTCGGCGGTCCAGAAAGAGGCTTC 33024464 Query 50487 TGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATT 50546 ||||| || ||||| | |||||| | | |||||||| ||||| || ||||| | Sbjct 33024465 GGCCTTCTTGTACATCTCCCAGATCTGCGGGTATTGGATCGGGAACATGCAGAATCTGTC 33024524 Query 50547 TGGATTTGG 50555 ||| |||| Sbjct 33024525 TGGGGTTGG 33024533 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 |||||| | ||||| | ||| ||||| || || || |||||| | ||||| || || Sbjct 27689544 AGTTCCAGAGTTAAAGAGGGTGGGAGATGCATGAGTGAACCATCGCTGAGACATTAAATG 27689485 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 ||| |||| | |||||| || |||||| || |||||| || || | || | ||| | Sbjct 27689484 GTAAGTCTGGACAGCTGAATCAATATCCTGTTTATGAATGCCAACAGAAACTCTCATGAG 27689425 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 |||||||||||| |||||||| | || || | ||| || | ||| ||| |||| | Sbjct 27689424 CATGTGCTGAGGCCTTTCAACCACTTTCCCATGGACTTTTAAAAGGTATGATCTTTCAAG 27689365 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||| || ||||| || |||| ||| || || || |||||||| || Sbjct 27689364 AGTCTTGAAACCGAAGTAGTCATATTCGAAATCGCGGTCGTAAATGAT 27689317 Score = 93.3 bits (102), Expect = 6e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 ||||| || || | || | ||| || | ||| | || | || ||| |||| ||||||| Sbjct 27689858 CCTCCTTGGTCAACATAACGAGCAGTATCATTGAACACCCGCAGCATAGGAACAATACCA 27689799 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 || ||| ||||| || || || || |||||| | |||||||| || || || Sbjct 27689798 TTAGATTCTCCATTAGTGCCACGAATGTAACTTCCAGTAGCACGAATGTTGTGAACAGAA 27689739 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | ||| || ||||| || |||| || | ||| || ||| |||||||| || || Sbjct 27689738 ACACCAATACCCCCAGCTGATTTACTTATAACTGCACACTCTTTCAACGTATCGTAAATC 27689679 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||||| ||||||||||| ||||| | ||||| ||||| Sbjct 27689678 CCCTCAATGCTATCATCCTTCATGCAGATAAGAAAGCAGCT 27689638 >seq3 Length=64984695 Score = 109 bits (120), Expect = 8e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| || || | ||| | ||| || | ||| |||| | || |||||||| |||||| Sbjct 53582236 TCCTCCTTGGTCAACGTAGCGAGCAGTATCATTGAAAACACGCAGCATTGGAAGAATACC 53582295 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| ||||| ||||| || || || || |||||| | ||||| || || || ||| Sbjct 53582296 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGA 53582355 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| || ||||| || |||| || | || || ||| || |||||||| || Sbjct 53582356 AACACCGATACCCCCAGCTGATTTACTTATAACAGCACACTCTTTCAAGGTATCATATAT 53582415 Query 80274 GCCCTCTATGCTATCATCAATCATG 80298 ||||| ||||||||||| ||||| Sbjct 53582416 TCCCTCGATGCTATCATCCTTCATG 53582440 Score = 109 bits (120), Expect = 8e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 |||||| | ||| || | || |||||||| || ||||||||| | ||||| || || Sbjct 53582562 AGTTCCTGAATTGAAGAGAGTCGGAGAAGCATGAGTAAACCATCGCTGAGACATTAAATG 53582621 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 ||| || | || || || || ||||| || ||||| || || | || | ||| | Sbjct 53582622 GTAAGTTTTGATTGCGGAATCAATATCTTCTTTGTGAATGCCAACAGAAACCCTCATGAG 53582681 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 ||||||||||||||| ||||| | || || | ||| || | ||| ||| | || | Sbjct 53582682 CATGTGCTGAGGTCTCTCAACCACTTTCCCATGGACTTTTAAGAGGTATGATCTCTCAAG 53582741 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 |||||| || ||||| |||| |||| ||| || || || ||||| || Sbjct 53582742 AGTTTTGAACCCAAAGTAGTCGTATTCAAAATCACGATCATAAATGAT 53582789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717973537653040