Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq5 104 2e-17 seq4 89.7 4e-13 seq3 86.0 5e-12 >seq5 Length=46902585 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||||||||| | |||||| | ||| | ||| |||||| || | |||||||||| Sbjct 33725096 GCCTCCACGCAGACGTAACACGAGATGAAGAGTAGACTCCTTCTGAATGTTGTAATCGGC 33725037 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||||||||| | || || | || ||||||||||| ||||| ||||| || || | ||| Sbjct 33725036 CAATGTACGACCATCCTCAAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCAGGCGG 33724977 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | || || || || ||| | ||||| | | | |||||| ||| ||| | Sbjct 33724976 GATTCCCTCCTTGTCTTGTATCTTGGCCTTGACGTTATCGATGGTGTCG-GAGCTCTCCA 33724918 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || |||||||| |||| || || ||||| || ||||| Sbjct 33724917 CCTCGAGTGTGATCGTTTTTCCCGTTAAGGTCTTGACAAAGATCTGCAT 33724869 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 |||||| || | |||||||||| | ||| | | |||| |||| || || ||||| || Sbjct 12956414 CTCCTTCTGGATGTTGTAATCGGCGAGTGTCCTTCCGTCTTCCAGCTGCTTCCCGGCGAA 12956355 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 |||| |||||| ||||| | || | ||||| || || |||| | || || | Sbjct 12956354 GATCAGTCGCTGCTGATCCGGTGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTCACATT 12956295 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | | |||||| | ||||| |||| ||||| || || || ||||| |||||||| Sbjct 12956294 GTCGATCGTGTCGGATGATTCGACCTCTAAGGTTATCGTCTTCCCCGTTAGGGTTTTCAC 12956235 Query 43098 AAAAATTTGCATTTTCTT 43115 ||| || ||||||||||| Sbjct 12956234 AAAGATCTGCATTTTCTT 12956217 >seq4 Length=53719093 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/230 (70%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||||||||| | |||||||| || | || ||||||||| | ||||| || | Sbjct 28156520 GCCTCCACGCAGACGCAACACCAAGTGAAGTGTAGACTCCTTTTGAATGTTGTAGTCCGC 28156461 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 |||||| | |||| || | || |||||||| || ||||| | ||| || || | || Sbjct 28156460 CAATGTTCTGCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGAGG 28156401 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CT-CG 43059 | ||| || || || |||| ||||||| || ||| || ||| ||| || | Sbjct 28156400 AATACCCTCCTTGTCTTGGATCTTTGCTTTGACGTTGTCAATAGTATCG-GAGCTCTCCC 28156342 Query 43060 ACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || | || ||||||||||| || | || || ||||| || ||||| Sbjct 28156341 ACCTCCAATGTAATAGTTTTTCCAGTCAACGTCTTGACAAAGATCTGCAT 28156292 >seq3 Length=64984695 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||||||||| | ||||| || |||| ||| |||||| || | ||||| |||| Sbjct 59730640 CCTCCACGCAGACGCAACACTAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCA 59730581 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || || | || || |||||||| || | ||||| || || | || Sbjct 59730580 AGGGTGCGACCATCCTCAAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCCGGAGGG 59730521 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| | ||||| || ||| |||||| | |||||| Sbjct 59730520 ATCCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAACTCTCGACC 59730461 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || || ||||| || || || || ||||| || ||||| Sbjct 59730460 TCTAGAGTAATCGTCTTTCCCGTCAGTGTCTTGACAAAGATCTGCAT 59730414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381216747779388