Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2 140 5e-28 seq7 132 7e-26 seq4 89.7 8e-13 >seq2 Length=52886895 Score = 140 bits (154), Expect = 5e-28 Identities = 379/565 (67%), Gaps = 25/565 (4%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||||| |||||||| || || | |||||||| ||||| | |||||| ||||| || Sbjct 45187528 ATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAAGAAGTCGACCTC 45187469 Query 125079 TCCAAGGACCTGTACGATTGGGAGA-----CTCGTTTGACTGAAACTGAGCGAGAGTTTA 125133 ||| | ||| ||| ||||||| |||| ||| || ||||| | || | Sbjct 45187468 TCCCAAGACACACGCGACTGGGAGAACAATCTCGAC-GACGGA----GAGCGCCACTTCA 45187414 Query 125134 TATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGA 125193 | ||| | | |||||||| |||| |||||| || ||||| ||| ||||| | Sbjct 45187413 TCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGGATCGTTCTCGAGAATCTCGCCA 45187354 Query 125194 CACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTT-TACGGATTCCAAAT 125251 | || ||| | || || | ||| |||| | || || || ||||| ||||| || Sbjct 45187353 CCCGGTTCATGTCCGACGTGCAGGTCTCC-GAGGCG-CGCGCCTTCTACGGGTTCCAGAT 45187296 Query 125252 CATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGA 125311 | ||| ||||| | |||||||| |||||| | || | || | |||||| || Sbjct 45187295 CGCGATCGAGAATATCCACTCGGAGATGTACAGTCTCTTGTTAGATACGTACATCAAGGA 45187236 Query 125312 TCCGCAACGTAA---ACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAA 125368 | ||| | | || ||| ||||| ||| || || || | || | | || Sbjct 45187235 -CAACAAGGAGAGGGAC-CAT-CTCTTCCGCGCGATTGAGACCATCCCTTGCGTCGCGAA 45187179 Query 125369 AAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACT 125428 ||||| ||||||| || ||||||||| | || ||| |||||| || | Sbjct 45187178 GAAGGCCCAATGGGCCATGAAGTGGATCGACGGATCTCAGACTTT---CGCCGAGAGGAT 45187122 Query 125429 GGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TGCGGCCATCTTTT 125487 ||||| ||||| ||| || || |||||||| || ||||| || ||| | ||||| | Sbjct 45187121 CGTGGCGTTCGCTTGCGTCGAAGGGATCTTCTTCTCCGGTAGCTTCTGCT-CGATCTTCT 45187063 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAG 125547 ||||||||||||| || |||||||| || || || | |||||| | || || |||| Sbjct 45187062 GGCTCAAGAAGCGTGGGCTCATGCCGGGGCTCACCTTCTCCAACGAGCTGATCTCGCGAG 45187003 Query 125548 ACGAGGGCCTACACTGTGACTTTGC 125572 |||| ||||| ||||| ||||| || Sbjct 45187002 ACGAAGGCCTTCACTGCGACTTCGC 45186978 >seq7 Length=48366697 Score = 132 bits (146), Expect = 7e-26 Identities = 374/560 (67%), Gaps = 16/560 (3%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||||| |||||||| ||||| | ||||| || ||||| | |||||| ||||| || Sbjct 33024488 ATCTGGGAGATGTACAAGAAGGCCGAAGCCTCTTTCTGGACCGCCGAAGAAGTCGACCTC 33024429 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||| | ||| ||| ||||||| || | | || |||||| | || || Sbjct 33024428 TCCCAAGACAATCGCGACTGGGAGAATC---TCAACGACGGAGAGCGACACTTCATCAAA 33024372 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| | | |||||||| |||| ||| || |||||||| || ||||| | || Sbjct 33024371 CACGTCCTCGCCTTCTTCGCCGCCTCAGACGGAATCGTTTTGGAGAATCTCGCCTCGCGG 33024312 Query 125199 TTC-TCTCAAGAGTTGACCATTC-CAGAGGTGTCGTGCTTT-TACGGATTCCAAATCATG 125255 ||| | || || || | | || | |||| | ||||| || ||||| ||||| ||| | Sbjct 33024311 TTCATGTCC-GACGTG-CAAGTCTCCGAGGCG-CGTGCCTTCTACGGGTTCCAGATCGCG 33024255 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCG 125315 |||||||| | ||||| || |||||| ||| | |||| |||||| || | Sbjct 33024254 ATTGAGAATATCCACTCAGAGATGTACAGCCTCCTGCTCGACACGTACATCAAGGA-CAA 33024196 Query 125316 CAACGTAAAC-ACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGC 125374 ||| | | || || || ||| || || || | || | | || ||||| Sbjct 33024195 CAAGGAGAGGGACCACCTTTTCCGCGCGATTGAAACCATCCCTTGCGTCGCGAAGAAGGC 33024136 Query 125375 TCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGC 125434 ||||||| || ||||||||||| || || | |||||| || | || || Sbjct 33024135 CCAATGGGCCATGACGTGGATCGATGGATCTCAGACT---TTCGCCGAGAGGATCGTCGC 33024079 Query 125435 ATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG-TTTTGCGGCCATCTTTTGGCTCA 125493 ||||| ||| || || |||||||| || ||||| || ||| | ||||| ||||| | Sbjct 33024078 CTTCGCTTGCGTCGAAGGGATCTTCTTCTCCGGTAGCTTCTGC-TCGATCTTCTGGCTTA 33024020 Query 125494 AGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGG 125553 ||||||| || |||||||| || | || | |||||||| || || |||||||| | Sbjct 33024019 AGAAGCGAGGGCTCATGCCTGGGTTAACCTTCTCCAACGAGTTGATCTCCCGAGACGAAG 33023960 Query 125554 GCCTACACTGTGACTTTGCC 125573 || | ||||| || || ||| Sbjct 33023959 GCTTGCACTGCGATTTCGCC 33023940 >seq4 Length=53719093 Score = 89.7 bits (98), Expect = 8e-13 Identities = 174/256 (68%), Gaps = 6/256 (2%) Strand=Plus/Minus Query 127445 ATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTT 127504 |||| |||||||| || || || || |||||||| |||||||| | | |||| || | Sbjct 33491001 ATCCATGCGTCAGATGACCACCTGAAGGTAGATCGAGGCCCATGATACGATCGTGAGGCT 33490942 Query 127505 TAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACA 127564 || | | ||||| |||| || |||||| || || ||||| || || ||| | Sbjct 33490941 GAAGCAAGGCGGTGTAGGCGGCGAAATTGGCCGGAGATCCGGAGTAGGGCTGGACATTGA 33490882 Query 127565 CTCCCCATT---CGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCA 127621 | |||||| |||| ||| | | ||| ||| |||| || ||| || Sbjct 33490881 CGCCCCATGATGCGGAATCG---AGACGGAAGGCTTCGAGAGCGCGTGACTGGCAGAGAT 33490825 Query 127622 GTTCGATGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCG 127681 ||||| | ||||| ||||||||||| || ||||| || || || ||| | || || | Sbjct 33490824 TCTCGATCTGGTCGATGAACTCGTTACCTCCGTAGTAACGGTTGCCAGGCATGCCTTCGG 33490765 Query 127682 AGTACTTGTTGATGAG 127697 |||| |||||| |||| Sbjct 33490764 AGTATTTGTTGGTGAG 33490749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740754569089360