Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq4 105 6e-18 seq3 95.1 1e-14 seq1 95.1 1e-14 >seq4 Length=53719093 Score = 105 bits (116), Expect = 6e-18 Identities = 161/228 (71%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| |||| | ||||||| ||| | ||||||||||||||||| ||||| |||||| Sbjct 28156519 CCTCCACGCAGACGCAACACCAAGTGAAGTGTAGACTCCTTTTGAATGTTGTAGTCCGCC 28156460 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | |||| || |||| || ||||| || || || | || | |||||||| ||| || Sbjct 28156459 AATGTTCTGCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGA 28156400 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCT-CCGT 18993 | ||||| ||||| || || ||| || | | | | ||||||| || || Sbjct 28156399 ATACCCTCCTTGTCTTGGATCTTTGCTTTGACGTTGTCAATAGTATCGGAGCTCTCCCAC 28156340 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||||| ||||| || || || || |||||||| || ||||| Sbjct 28156339 CTCCAATGTAATAGTTTTTCCAGTCAACGTCTTGACAAAGATCTGCAT 28156292 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||| | ||||||||| || ||||||||||| || || | || | ||||| Sbjct 7247662 CACGAGGTGGAGCGTAGACTCTTTCTGAATATTGTAGTCAGCGAGCGTGCGCCCATCCTC 7247721 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| ||||| || | || || |||||||| ||| || | ||| || ||||| Sbjct 7247722 AAGCTGCTTACCGGCGAAGATGAGCCTCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTG 7247781 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || || || | | | | ||| ||| ||| |||| |||||||| || Sbjct 7247782 GATCTTAGCCTTGACGTTGTCAATAGTGTCGGAGCTCTCGACCTCGAGAGTAATGGTCTT 7247841 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || |||| |||||| || ||||||||||| Sbjct 7247842 GCCGGTTAGAGTTTTCACGAAAATTTGCAT 7247871 >seq3 Length=64984695 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/237 (70%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||| | |||| ||| | |||||||||||| || || ||||| || ||| Sbjct 11141789 CCACCACGAAGCCTGAGGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCC 11141848 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | |||| |||| ||| || || ||| | ||||| |||||||||||| || Sbjct 11141849 AAGGTTCTCCCGTCTTCCAACTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGAGGA 11141908 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GC--TCC 18991 | ||| || ||||| || || ||| || | | ||| || | ||| || ||| Sbjct 11141909 ATGCCTTCCTTGTCCTGGATCTTTGCTTTAACGTTGTCGATGGT---GTCAGAGCTTTCC 11141965 Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAAT 19048 |||| ||| ||||| || || || | |||||| || || || ||||| | |||| Sbjct 11141966 ACCTCGAGGGTGATGGTCTTCCCGGTGAGAGTTTTCACGAAGATCTGCATCTGAAAT 11142022 >seq1 Length=43764888 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||| | |||| ||| | |||||||||||| ||||| |||||||| ||| Sbjct 35467237 CCACCACGGAGCCTGAGGACCAAGTGAAGCGTAGACTCCTTCTGAATGTTGTAATCGGCC 35467178 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || || | || |||| || || || ||| | ||||| |||||||| || || Sbjct 35467177 AAGGTCCTGCCATCTTCCAATTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCGGGAGGA 35467118 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||| ||||| ||||| ||| || | | | | || ||| | |||| Sbjct 35467117 ATACCCTCCTTGTCCTGGATTTTGGCTTTCACATTGTCAATGGTGTCGGAACTCTCCACC 35467058 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || || || || ||||| ||||| ||||| || |||||||| Sbjct 35467057 TCTAGCGTGATCGTCTTTCCTGTCAAAGTCTTGACGAAGATTTGCAT 35467011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414406639999084