Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq9 86.0 4e-12 >seq9 Length=54679868 Score = 86.0 bits (94), Expect = 4e-12 Identities = 151/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||||||||||||| | ||||||||||| || || ||||| |||| ||| | | Sbjct 23042218 CGCAACACCAAATGAAGAGTCGACTCTTTCTGAATGTTGTAGTCAGCCAAGGTACGACCA 23042277 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | ||||| ||| || || | ||| |||||||| | || || || || || Sbjct 23042278 TCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGGATTCCCTCCTTG 23042337 Query 33275 TCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || |||| ||| || || | | ||| |||||| | | ||| || || || Sbjct 23042338 TCCTGAATCTTAGCC---TTGACGTTGTCAATGGTGTCGGAGCTCTCAACTTCGAGGGTG 23042394 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 ||||| ||||| |||||||| || || || || |||||| Sbjct 23042395 ATCGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCATG 23042433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318649834535628