Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq3 82.4 5e-11 >seq3 Length=64984695 Score = 82.4 bits (90), Expect = 5e-11 Identities = 181/269 (67%), Gaps = 7/269 (3%) Strand=Plus/Plus Query 25446 TAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAA 25505 || |||||||| || || | |||||||| || || || | || | |||| | Sbjct 32924573 TACACGTGAGCATCCCCAATGACATGGACAAAATCACCAGGGACAAGTTCACACACGTGA 32924632 Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || | |||| | || || ||| ||||| ||||||||||| || || || | ||||| Sbjct 32924633 GCGAGCATGCAAGTAAGAAGAGAGTAGGAAGCGATGTTAAACGGCACACCAAGGCCCATA 32924692 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTG--- 25622 | || |||| | ||| || | ||| ||||||||||| | || ||| || ||||| Sbjct 32924693 T-CCGCCGAACGCTGATACATCTGGCACGAGAGCTCCCCTTCCGCCACATAGAACTGCGC 32924751 Query 25623 ACACATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCA 25682 | ||| ||| |||||||||||| || || || | || ||||||||| || | Sbjct 32924752 AAACA---TGTGGCACGGAGGAAGCGCCATCAGCTTGAGATCAGAAGGGTTCCAAGCAGA 32924808 Query 25683 CACGATGATGCACCTGTCTTCTGGGTTGT 25711 | ||||| | || || || || |||| Sbjct 32924809 TAATATGATACGCCGATCATCAGGATTGT 32924837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340001273487678