Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq8 118 6e-22 seq5 118 6e-22 seq7 114 7e-21 seq2 114 7e-21 seq9 113 2e-20 seq3 113 2e-20 seq1 111 8e-20 seq4 104 1e-17 >seq8 Length=41758685 Score = 118 bits (130), Expect = 6e-22 Identities = 79/88 (90%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 11444 AAAAAATCAAA--TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||| ||| |||||||||| | | |||||||| |||||||||||||||||||||| Sbjct 20686156 AAAAAATGAAAATTTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACG 20686215 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 20686216 ACGCTCTAACCAACTGAGCTAATGGGCC 20686243 Score = 109 bits (120), Expect = 3e-19 Identities = 78/89 (88%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| ||||| ||||||| | | |||||||| |||||||||||||||||||| Sbjct 35498930 AAAAAAAAAACAAAT-GGCCCATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCAC 35498872 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 35498871 GACGCTCTAACCAACTGAGCTAATGGGCC 35498843 Score = 98.7 bits (108), Expect = 5e-16 Identities = 79/94 (84%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 11439 TTAA-TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 |||| ||||||| | | ||||| || | | |||||||| ||||||||||||||||| Sbjct 17188540 TTAACTAAAAAAACTA--TGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAG 17188597 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||||||||| ||||||||||||||| |||||| Sbjct 17188598 CACGACGCTCTAACCAACTGAGCTAATAGGCCGT 17188631 Score = 96.9 bits (106), Expect = 2e-15 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| || Sbjct 35459827 GGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGG 35459886 Query 11528 CCGTC 11532 || || Sbjct 35459887 CCATC 35459891 Score = 96.9 bits (106), Expect = 2e-15 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| || Sbjct 35460052 GGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGG 35460111 Query 11528 CCGTC 11532 || || Sbjct 35460112 CCATC 35460116 Score = 95.1 bits (104), Expect = 6e-15 Identities = 73/86 (85%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| |||| ||||| || | | |||||||| ||||||||||||||||||||||| Sbjct 31815393 AAAAAGAAAATGTGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGAC 31815334 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 31815333 GCTCTAACCAACTGAGCTAATAGGCC 31815308 Score = 86.0 bits (94), Expect = 3e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||||||||||| |||| |||||||||| |||| Sbjct 17163679 TCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 17163737 >seq5 Length=46902585 Score = 118 bits (130), Expect = 6e-22 Identities = 80/89 (90%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 11442 ATAAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| || ||||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 2405754 ATCAAAAATGAATATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCAC 2405695 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 2405694 GACGCTCTAACCAACTGAGCTAATGGGCC 2405666 Score = 105 bits (116), Expect = 3e-18 Identities = 79/93 (85%), Gaps = 4/93 (4%) Strand=Plus/Minus Query 11443 TAAAAAATCAAA----TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||||||| |||| |||||||||| | |||||||| ||||||||||||||||||| Sbjct 5053004 TAAAAAACCAAAACAGTTGGCCCATGCAGATTTCGAACCTGCGACCTTCGCGTTATTAGC 5052945 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 | ||||||| |||||||||||||||||||||| Sbjct 5052944 GCAACGCTCTAACCAACTGAGCTAATGGGCCGT 5052912 >seq7 Length=48366697 Score = 114 bits (126), Expect = 7e-21 Identities = 80/91 (88%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 || ||||| |||| | ||||||||| | | |||||||| ||||||||||||||||||| Sbjct 24481443 AAAAAAAATTCAATTAGTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGC 24481502 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||||||||||||||||||| Sbjct 24481503 ACGACGCTCTAACCAACTGAGCTAATGGGCC 24481533 Score = 96.9 bits (106), Expect = 2e-15 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||| || | ||||||||||| |||||||||||||||||||||||||||| |||| Sbjct 44051296 TTGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 44051355 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 44051356 CTGAGCTAATAGGCC 44051370 Score = 91.5 bits (100), Expect = 8e-14 Identities = 79/97 (81%), Gaps = 4/97 (4%) Strand=Plus/Plus Query 11433 ATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492 |||||| ||| ||||| |||||||| ||| | | | |||||| |||||||||||| Sbjct 32028312 ATAGAA--AATTCAAAAT--AATTGGCCTATGCAGGTTTTGAACCTGGGACCTTCGCGTT 32028367 Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||| ||| ||||||||||||||| |||| Sbjct 32028368 ATTAGCATGACGATCTAACCAACTGAGCTAATAGGCC 32028404 Score = 82.4 bits (90), Expect = 4e-11 Identities = 66/79 (84%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| ||||| || | | || ||||| ||||||| |||||||||||||||||||| | Sbjct 4536610 AAATGTGGCCTATACAGGTTTCAAACCTGTGACCTTCACGTTATTAGCACGACGCTCTAA 4536669 Query 11511 CCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||| Sbjct 4536670 CCAACTGAGCTAATAGGCC 4536688 >seq2 Length=52886895 Score = 114 bits (126), Expect = 7e-21 Identities = 79/89 (89%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| || |||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 10126003 AACAAAAAA--AAGTTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCAC 10126060 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 10126061 GACGCTCTAACCAACTGAGCTAATGGGCC 10126089 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 3794077 AAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 3794018 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 3794017 CAACTGAGCTAATAGGCC 3794000 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| || | ||||||||||| |||||||||||||||||||||||||||| |||||| Sbjct 3793923 TGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 3793864 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 3793863 TGAGCTAATAGGCC 3793850 >seq9 Length=54679868 Score = 113 bits (124), Expect = 2e-20 Identities = 76/85 (89%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||||| |||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 6649471 AAAAATC---TTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 6649527 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| Sbjct 6649528 CTCTAACCAACTGAGCTAATGGGCC 6649552 Score = 100 bits (110), Expect = 1e-16 Identities = 73/84 (87%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| ||| |||| || | ||||||||||| ||||||||||||||||||||||||| Sbjct 48315675 AAAATATAAT-GGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGC 48315733 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| |||| Sbjct 48315734 TCTAACCAACTGAGCTAATAGGCC 48315757 Score = 100 bits (110), Expect = 1e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||| || | ||||||||||| |||||||||||||||||||||||||||| ||| Sbjct 48315825 AAGTGGCCTATAGAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACC 48315884 Query 11513 AACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 48315885 AACTGAGCTAATAGGCC 48315901 Score = 96.9 bits (106), Expect = 2e-15 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| |||| || | ||| | | |||||||| ||||||||||||||||||||||||| Sbjct 39376356 AAAAACAAAATGCCTCATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGC 39376297 Query 11506 TCTRACCAACTGAGCTAATGGG 11527 ||| |||||||||||||||||| Sbjct 39376296 TCTAACCAACTGAGCTAATGGG 39376275 Score = 87.8 bits (96), Expect = 9e-13 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 |||||||| || | | || ||||| |||||||||||||||||||||||||||| ||| Sbjct 8028157 AATTGGCCTATACAGGTTTCTAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACC 8028098 Query 11513 AACTGAGCTAATGGGCC 11529 |||||||| ||| |||| Sbjct 8028097 AACTGAGCAAATAGGCC 8028081 >seq3 Length=64984695 Score = 113 bits (124), Expect = 2e-20 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| | | ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 6951368 AAAAAAAAATAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 6951427 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 6951428 GCTCTAACCAACTGAGCTAATGGGCC 6951453 Score = 109 bits (120), Expect = 3e-19 Identities = 74/84 (88%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| ||| |||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 34255150 AAAATTAAAGTGGCCCATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGC 34255091 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||||||||||||||||||| Sbjct 34255090 TCTAACCAACTGAGCTAATGGGCC 34255067 Score = 100 bits (110), Expect = 1e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || |||||||| | | |||||||| |||||||||||||||||||||||||||| ||| Sbjct 34233284 AAGTGGCCCATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACC 34233343 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||||||||| Sbjct 34233344 AACTGAGCTAATGGGCC 34233360 Score = 98.7 bits (108), Expect = 5e-16 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| || | ||||||||||| |||||||||||||||||||||||||||| |||| | Sbjct 3792869 TGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 3792810 Query 11516 TGAGCTAATGGGCCGT 11531 ||||||||| |||||| Sbjct 3792809 TGAGCTAATAGGCCGT 3792794 Score = 95.1 bits (104), Expect = 6e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| || | ||||||||||| |||||||||||||||||||||||||||| |||| | Sbjct 3792712 TGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 3792653 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 3792652 TGAGCTAATAGGCC 3792639 Score = 89.7 bits (98), Expect = 3e-13 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| | | ||||| || | | ||||| || |||||||||||||||||||||||| Sbjct 33951019 AAAAAT-AGAGTGGCCTATACAGGTTTCGAAACTGTGACCTTCGCGTTATTAGCACGACG 33950961 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 33950960 CTCTAACCAACTGAGCTAATAGGCC 33950936 Score = 89.7 bits (98), Expect = 3e-13 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| ||| |||| || | | | |||||| |||||||||||||||||||||||| Sbjct 34236065 AAAAATAGAAT-GGCCTATACAGGTTTTGAACCTGTGACCTTCGCGTTATTAGCACGACG 34236123 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 34236124 CTCTAACCAACTGAGCTAATAGGCC 34236148 >seq1 Length=43764888 Score = 111 bits (122), Expect = 8e-20 Identities = 76/85 (89%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| || |||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 43410089 AAAAAACAC-TTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 43410147 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| Sbjct 43410148 CTCTAACCAACTGAGCTAATGGGCC 43410172 Score = 98.7 bits (108), Expect = 5e-16 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 13218151 AAAGTGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 13218210 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 13218211 CAGCTGAGCTAATAGGCC 13218228 >seq4 Length=53719093 Score = 104 bits (114), Expect = 1e-17 Identities = 79/93 (85%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 || ||| ||||| ||| ||||| || | ||||||||||| |||||||||||||||| Sbjct 40359670 AAATAAGGAAAAA--AAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTA 40359727 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| ||||||||||||||| |||| Sbjct 40359728 GCACGACGCTCTAACCAACTGAGCTAATAGGCC 40359760 Score = 87.8 bits (96), Expect = 9e-13 Identities = 70/84 (83%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| | || | || || || |||||||||| || |||||||||||||||||||| | Sbjct 40475197 AAAATAATAT-GACCTATAAAGAGATCGAACCTGTGATCTTCGCGTTATTAGCACGACAC 40475139 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| |||| Sbjct 40475138 TCTAACCAACTGAGCTAATAGGCC 40475115 Score = 82.4 bits (90), Expect = 4e-11 Identities = 47/49 (96%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 11481 GACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 40468885 GACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 40468837 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261386394817336