Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq5 165 1e-36 seq8 140 5e-29 seq2 140 5e-29 seq3 131 3e-26 seq4 111 2e-20 >seq5 Length=46902585 Score = 165 bits (182), Expect = 1e-36 Identities = 184/246 (75%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||| | |||||||||||||| ||||||||||| || || |||||||| |||||||| ||| Sbjct 2917274 CTTAGGGATAACATCCAAGGTATCACCAAGCCTGCCATTCGTCGTCTTGCTCGTCGAGGT 2917215 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| | || ||| |||| || |||| | | || | ||||||||| Sbjct 2917214 GGTGTCAAGCGTATTAGCGGTTTGATCTACGAGGAGACCAGAGGAGTCCTCAAGATCTTC 2917155 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| || |||| ||||| || ||| ||||||||||| | | ||||||||| Sbjct 2917154 CTCGAGAATGTCATCCGCGATGCCGTCACCTACACCGAGCACGCGAGGAGGAAGACTGTC 2917095 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || |||||||| | || ||||| ||||| | ||||| || | | || ||||| || Sbjct 2917094 ACAGCCATGGATGTGGTTTATGCTTTGAAGAGGCAAGGACGCACTCTCTACGGTTTCGGC 2917035 Query 16694 AGTTAA 16699 ||||| Sbjct 2917034 GGTTAA 2917029 Score = 159 bits (176), Expect = 5e-35 Identities = 183/246 (74%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||| | |||||||||||||| ||||||||||| ||||| |||||||| |||||||| ||| Sbjct 2855406 CTTAGGGATAACATCCAAGGTATCACCAAGCCTGCTATTCGTCGTCTTGCTCGTCGAGGT 2855465 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| | || ||| |||| || |||| | | || | ||||||||| Sbjct 2855466 GGCGTCAAGCGTATTAGCGGTTTGATCTACGAGGAGACCAGAGGAGTCCTCAAGATCTTC 2855525 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| || |||| || ||| || ||| || |||||||| | | |||||||| Sbjct 2855526 CTCGAGAATGTCATCCGCGACGCTGTCACCTACACTGAGCACGCGAGGAGGAAGACTGTT 2855585 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | |||||| | || ||||| ||||| | ||||| |||| | || ||||| || Sbjct 2855586 ACTGCTATGGATGTGGTTTATGCTTTGAAGAGGCAAGGACGTACTCTCTACGGTTTCGGC 2855645 Query 16694 AGTTAA 16699 ||||| Sbjct 2855646 GGTTAA 2855651 >seq8 Length=41758685 Score = 140 bits (154), Expect = 5e-29 Identities = 182/249 (73%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||| | |||||||||||||| ||||||||||| || ||||||||||| ||||| | || Sbjct 40036901 CTTAGGGATAACATCCAAGGTATCACCAAGCCTGCCATCCGTCGTCTTGCTCGCAGAGGC 40036960 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| | || ||| |||| || |||| | | || | |||||||| Sbjct 40036961 GGTGTCAAGCGTATTAGCGGTTTGATCTACGAGGAGACAAGAGGAGTCCTCAAGATCTTT 40037020 Query 16574 CTCAAGACCGTTATCCATGATGCT-TTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| || |||| || ||| || || || ||||||||||||| | |||||||| Sbjct 40037021 CTCGAGAATGTCATCCGCGACGCTGTTACA-TACACCGAGCACGCTAGGAGGAAGACTGT 40037079 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | |||||| | || || || ||||| | ||||| || | | || ||||| || Sbjct 40037080 TACGGCTATGGATGTGGTTTACGCGTTGAAGAGGCAAGGACGCACTCTCTACGGTTTCGG 40037139 Query 16693 AAGTTAATC 16701 ||||||| Sbjct 40037140 CGGTTAATC 40037148 Score = 118 bits (130), Expect = 2e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||||||||| ||||||||||| || || |||||||| ||||| | |||||||| Sbjct 1817072 GATAACATCCAAGGCATCACCAAGCCTGCGATTCGTCGTCTTGCTCGCAGAGGTGGAGTG 1817013 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| | || || |||| || |||| | | || | |||||||||||| || Sbjct 1817012 AAGCGTATTAGCGGTCTGATCTACGAGGAGACCAGAGGAGTCCTCAAGATCTTCCTCGAG 1816953 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || |||| || || | || ||||||||||||| | ||||| || || | Sbjct 1816952 AATGTCATCCGCGACGCCGTGACTTACACCGAGCACGCTAGGAGGAAGACGGTTACTGCT 1816893 Query 16640 ATGGATATCGTCTATGCATTGAA 16662 |||||| | || ||||| ||||| Sbjct 1816892 ATGGATGTGGTGTATGCTTTGAA 1816870 Score = 116 bits (128), Expect = 6e-22 Identities = 160/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||| | | ||| ||||| |||||||| ||||| || || ||||| ||| Sbjct 28786216 GCCAAGAGGCATCGGAAAGTTCTACGAGACAACATCCAGGGAATTACGAAACCAGCGATC 28786157 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| | | || || || |||||| || || ||| |||| ||||| | | Sbjct 28786156 CGTCGTCTGGCGAGAAGAGGAGGTGTGAAGCGTATCAGCGGTTTGATCTACGAAGAAACT 28786097 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | |||||||| || ||| ||| || | ||| || | || || ||| Sbjct 28786096 CGCGGCGTTCTCAAGATCTTTCTAGAGAACGTGATTCGTGACGCGGTTACGTACACAGAG 28786037 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 |||||| || || || ||||| ||||||| | ||||| || Sbjct 28786036 CACGCTCGCCGCAAAACAGTCACGGCCATGGACGTTGTCTACGC 28785993 >seq2 Length=52886895 Score = 140 bits (154), Expect = 5e-29 Identities = 176/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| |||||||||||||| || || || | |||||||| | ||||||| Sbjct 7748774 GAGACAACATCCAGGGAATCACCAAGCCGGCGATTCGGAGGCTGGCTCGCAGAGGTGGAG 7748715 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || ||| | |||| || |||| |||| || | |||||||| | Sbjct 7748714 TCAAGCGTATCAGTGGTCTCATCTACGAGGAGACACGTGGAGTCCTCAAGATCTTTTTGG 7748655 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| |||||| | || ||| | ||| ||||||||||||| | |||||||| || Sbjct 7748654 AGAACGTTATTCGAGACGCTGTGACCTACACCGAGCACGCTAGGAGGAAGACTGTGACTG 7748595 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| | ||||| || ||||| | ||||| | | | |||| || || || ||| Sbjct 7748594 CGATGGATGTGGTCTACGCGTTGAAGAGGCAAGGGAGGACGCTTTACGGGTTCGGCGGTT 7748535 Query 16698 AA 16699 || Sbjct 7748534 AA 7748533 >seq3 Length=64984695 Score = 131 bits (144), Expect = 3e-26 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||| ||||||||||| || || || | ||||||||| | ||||||| Sbjct 5865284 GAGACAACATCCAAGGGATCACCAAGCCGGCGATTCGGAGACTGGCTCGTAGAGGTGGAG 5865225 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||| ||| || ||| | |||| || |||| |||| || | |||||||| | Sbjct 5865224 TCAAACGTATCAGTGGTCTCATCTACGAGGAGACACGTGGCGTCCTCAAGATCTTTTTGG 5865165 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| |||| ||| || || ||| ||||||||||||| | ||||| || || Sbjct 5865164 AGAACGTCATCCGTGACGCCGTCACCTACACCGAGCACGCTAGGAGGAAGACCGTGACTG 5865105 Query 16638 CCATGGATATCGTCTATGCATTGAA 16662 | ||||| |||||||||| |||| Sbjct 5865104 CGATGGACGTCGTCTATGCGCTGAA 5865080 Score = 125 bits (138), Expect = 1e-24 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||||||||| || || |||||| |||||||| | || || | Sbjct 47741905 GAGACAACATCCAAGGAATCACCAAGCCTGCGATTCGTCGTTTGGCTCGTAGAGGAGGCG 47741964 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| || || || |||| || |||| |||| || | |||||||| | Sbjct 47741965 TGAAGCGTATCAGCGGTCTGATCTACGAGGAGACACGTGGCGTCCTCAAGATCTTTTTGG 47742024 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| |||||||| ||| || || || ||||||||||| | ||||| || || Sbjct 47742025 AGAACGTTATCCGTGACGCCGTCACATACACCGAGCACGCGCGGAGGAAGACGGTGACGG 47742084 Query 16638 CCATGGATATCGTCTATGC 16656 |||||||| | || ||||| Sbjct 47742085 CCATGGATGTGGTGTATGC 47742103 Score = 111 bits (122), Expect = 2e-20 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||||||||| |||||||| || ||| | ||||| ||||| | || || | Sbjct 16216893 GAGACAACATCCAAGGAATTACCAAGCCTGCGATCAGGCGTCTTGCTCGCAGAGGAGGCG 16216952 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||||| || || ||| |||| ||||| | | | || |||||||||| ||| Sbjct 16216953 TTAAGCGAATCAGCGGTTTGATCTACGAAGAAACGAGAGGAGTCCTGAAGATCTTTCTCG 16217012 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || ||| || || || || ||||||||||| | | ||||| || || Sbjct 16217013 AGAATGTGATCAGAGACGCCGTCACTTACACCGAGCACGCGAGGAGGAAGACGGTGACGG 16217072 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTA 16676 | |||||| | || ||||| ||||| | ||||| |||| Sbjct 16217073 CAATGGATGTGGTTTATGCTTTGAAGAGACAAGGACGTA 16217111 >seq4 Length=53719093 Score = 111 bits (122), Expect = 2e-20 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || ||||| |||||||| || || |||||||| || || |||||| | || | | || Sbjct 6578642 CTCCGAGACAACATCCAGGGGATTACCAAGCCGGCGATTCGTCGTTTAGCGAGAAGAGGC 6578701 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| || || ||| |||| || |||| ||| | ||| | ||||||||| Sbjct 6578702 GGTGTGAAGCGTATCAGCGGTTTGATCTACGAGGAGACTCGCGGCGTTCTCAAGATCTTC 6578761 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| || |||| ||| ||| | || || |||||||| | | |||||||| Sbjct 6578762 CTCGAGAATGTGATCCGTGACGCTGTGACTTACACTGAGCACGCGAGGAGGAAGACTGTG 6578821 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAA 16662 || | |||||| | || || || ||||| Sbjct 6578822 ACGGCGATGGATGTTGTGTACGCGTTGAA 6578850 Score = 98.7 bits (108), Expect = 2e-16 Identities = 167/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||| ||||| ||||| || || | || || ||||| | || || | Sbjct 14614848 GAGACAACATCCAAGGGATCACGAAGCCTGCGATTAGGCGACTCGCTCGCAGAGGAGGCG 14614907 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||||| || || ||| |||| ||||||| | | ||||||||||| || ||| Sbjct 14614908 TGAAGCGGATCAGCGGCTTGATCTACGAAGAGACGAGAGGAGTTTTGAAGATATTTCTCG 14614967 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || ||| || || | || ||||||||||| | | ||||| || || Sbjct 14614968 AGAATGTGATCAGAGACGCCGTGACTTACACCGAGCACGCGAGGAGGAAGACGGTGACGG 14615027 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| | || ||||| |||| | ||||| || | | ||||| || || ||| Sbjct 14615028 CGATGGATGTTGTTTATGCTCTGAAGAGACAAGGACGCACTCTCTATGGATTCGGTGGTT 14615087 Query 16698 AA 16699 || Sbjct 14615088 AA 14615089 Score = 98.7 bits (108), Expect = 2e-16 Identities = 167/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||||||||| || || | ||||| |||||| | || || | Sbjct 44795244 GAGACAACATCCAAGGAATCACCAAGCCTGCGATTAGGCGTCTCGCTCGTAGAGGAGGCG 44795185 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||| | || || || |||| || |||| | | ||| |||||||||| ||| Sbjct 44795184 TGAAGAGAATCAGCGGGCTGATCTACGAGGAGACCAGAGGAGTTCTGAAGATCTTTCTCG 44795125 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || ||| || || | || || |||||||| | | ||||| || || Sbjct 44795124 AGAATGTGATCAGAGACGCCGTGACGTACACGGAGCACGCGAGGAGGAAGACGGTAACGG 44795065 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | ||||| | || ||||| ||||| | ||||| || | | ||||| || || ||| Sbjct 44795064 CGATGGACGTTGTTTATGCTTTGAAGAGGCAAGGGCGCACTCTCTATGGATTCGGTGGTT 44795005 Query 16698 AA 16699 || Sbjct 44795004 AA 44795003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79045132099998