Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq3 571 7e-158 seq5 410 2e-109 seq6538 107 2e-18 >seq3 Length=64984695 Score = 571 bits (632), Expect = 7e-158 Identities = 738/1012 (73%), Gaps = 18/1012 (2%) Strand=Plus/Minus Query 137875 TGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGACTACTACTTT 137934 ||||||||||| | | || ||||| || ||||| ||||||||||| ||| | || | Sbjct 33666123 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 33666064 Query 137935 TTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCT 137994 |||| ||| ||||| || | || || ||| | || || ||||| ||||| || | Sbjct 33666063 TTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 33666004 Query 137995 GGTACACCCACGGGTTGGCGTCTAGTT---ATCTTGAAGGCGCTAATTTCCTCACAGCAG 138051 |||| || || || ||||| ||||| || | ||||| ||||| | || || | Sbjct 33666003 GGTATACTCATGGATTGGC---TAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTG 33665947 Query 138052 CTGTTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGT 138111 | ||||| ||||||||| || | | | |||||| | | |||| ||||||||||| Sbjct 33665946 CAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAG 33665887 Query 138112 CTCAAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCC 138171 | ||||||||| | || |||| ||| | || || || ||| ||||||| || | || Sbjct 33665886 CACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCACC 33665827 Query 138172 ACGGGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCG-TCTGGTA 138230 |||| || || | || || || ||| | || || ||||| | |||| |||| | Sbjct 33665826 ACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTT- 33665768 Query 138231 GGCA--TCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCG 138288 || | || || || || |||||||||||||||||||| || ||||| || || | Sbjct 33665767 --CAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTG 33665710 Query 138289 TGTTCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGG 138348 | || || || ||||| | |||||||| ||||||||||||| || |||||||| | Sbjct 33665709 TCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAG 33665650 Query 138349 CAGCAATCTTCCGATTC---CTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACC 138405 | || || || |||||| || || |||| |||||||| |||| ||||| | |||| Sbjct 33665649 CGGCTATATTTCGATTCATCCTCTTTTTCCA--AGGGTTTC-ATAATTGGACATTGAACC 33665593 Query 138406 CCTTTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATG 138465 | |||||||||||||| || || ||| | || || | |||||| | || |||||||||| Sbjct 33665592 CATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCATG 33665533 Query 138466 GTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCAT 138525 ||||||| |||||||||||||| | ||||||||| || ||||||| || || | Sbjct 33665532 GTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTT 33665473 Query 138526 TTGAACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGC 138585 || | || ||||||| |||||||| ||||||||||| || |||||||| | ||||| | Sbjct 33665472 TTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCAC 33665413 Query 138586 AAATCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTC 138645 |||||||||| |||||||| ||||| |||||| | || ||||||||| | ||||| | Sbjct 33665412 AAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTAC 33665353 Query 138646 CCGTCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAG 138705 | || | ||| | |||| ||| | |||| | | ||||| ||| | |||||||| | Sbjct 33665352 CAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTG 33665293 Query 138706 CGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCT 138765 | ||||| ||||| || || ||||| |||||||| |||||||| ||||| ||||| |||| Sbjct 33665292 CCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCT 33665233 Query 138766 ACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAAC 138825 | || || || |||||| | || |||||| | || || |||||||| || ||||| | Sbjct 33665232 ATACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGC 33665173 Query 138826 CTCACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877 |||| |||||| || | || ||||| || || | ||| | || |||||||| Sbjct 33665172 CTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 33665121 >seq5 Length=46902585 Score = 410 bits (454), Expect = 2e-109 Identities = 436/572 (76%), Gaps = 6/572 (1%) Strand=Plus/Plus Query 138309 GGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAGCAATCTTCCGAT---TC 138365 |||||||| ||||||||||||| || |||||||| || || || || |||| || Sbjct 22000800 GGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATC 22000859 Query 138366 CTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTCATATGATGGGCGTA 138425 || || |||| ||||||| ||||| ||||| | ||||| |||||||||||||| || Sbjct 22000860 CTCTTTTTCC--AAGGGTTT-CATAATTGGACATTGAACCCATTTCATATGATGGGAGTC 22000916 Query 138426 GCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGCTACAGTAGAAAATACT 138485 || ||| | || || | |||||| | |||||||||||||||||||| |||||||||||| Sbjct 22000917 GCTGGTGTACTGGGCGCGGCTCTGTTATGTGCTATTCATGGTGCTACTGTAGAAAATACT 22000976 Query 138486 TTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTGAACCTACTCAAGAAGAA 138545 || | ||||||||| || ||||||| || || ||| | || ||||||| ||| Sbjct 22000977 TTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAA 22001036 Query 138546 GAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAATCTTTGGAATTGCTTTT 138605 ||||| ||||||||||| || |||||||| | ||||| ||||||||||| |||||||| Sbjct 22001037 GAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTT 22001096 Query 138606 AGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACT 138665 ||||| |||||| | || ||||||||| | ||||| || || | ||| | |||| Sbjct 22001097 TCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATG 22001156 Query 138666 AGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAGCGTATGATTTCGTATCGCAA 138725 ||| | |||| | | ||||| ||| | |||||||| || ||||| ||||| || || Sbjct 22001157 AGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAG 22001216 Query 138726 GAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTACACCAAGAACATTCTTCTG 138785 ||||| |||||||| |||||||| ||||| ||||| ||||| || || || |||||| | Sbjct 22001217 GAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTA 22001276 Query 138786 AATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAACCTCACGAAAACTTTGTTTTT 138845 || |||||| | || || |||||||| || ||||| ||||| |||||| || | || Sbjct 22001277 AACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTC 22001336 Query 138846 CCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877 ||||| || || | ||| | || |||||||| Sbjct 22001337 CCTGAGGAGGTTCTACCACGTGGAAACGCTCT 22001368 >seq6538 Length=695 Score = 107 bits (118), Expect = 2e-18 Identities = 205/301 (68%), Gaps = 6/301 (2%) Strand=Plus/Plus Query 137875 TGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGACTACTACTTT 137934 ||||||||||| | | || ||||| || ||||| ||||||||||| ||| | || | Sbjct 398 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 457 Query 137935 TTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCT 137994 |||| ||| ||| || | || || ||| | || || ||||| ||||| || | Sbjct 458 TTCCTTGTGCCAATTCCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 517 Query 137995 GGTACACCCACGGGTTGGCGTCTAGT---TATCTTGAAGGCGCTAATTTCCTCACAGCAG 138051 |||| || || || |||| ||||| ||| | ||||| ||||| | || || | Sbjct 518 GGTATACTCATGGATTGG---CTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTG 574 Query 138052 CTGTTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGT 138111 | ||||| ||||||||| | | | | |||| | | | |||| ||||||||||| Sbjct 575 CAGTTTCTACTCCTGCTAAAAGTTTAGCGCATTTTTTGTTGTTACTGTGGGGTCCTGAAG 634 Query 138112 CTCAAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCC 138171 | ||||| || || || |||| ||| | || || || ||| ||||||| || || | Sbjct 635 CACAAGGGGACTTCACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTTC 694 Query 138172 A 138172 | Sbjct 695 A 695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627709858054400