Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq3 383 2e-101 seq5 219 5e-52 seq6538 127 2e-24 >seq3 Length=64984695 Score = 383 bits (424), Expect = 2e-101 Identities = 714/1049 (68%), Gaps = 21/1049 (2%) Strand=Plus/Minus Query 171784 AAAGAGAATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCG 171843 ||| ||| | ||||| || | ||||| |||||| ||| || || ||||| || | | Sbjct 33666144 AAAAAGATTTATTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAG 33666085 Query 171844 GATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAG 171903 | ||||||||||| || || || |||||||| || | || | || ||||||||| || Sbjct 33666084 GTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAG 33666025 Query 171904 GAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAG 171963 | || || || || || |||||||| || ||||| | || || ||| | || || Sbjct 33666024 GTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTT 33665965 Query 171964 CAAACTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGT 172023 || |||||||| || ||||| || || |||| | || | | | ||| | | |||| Sbjct 33665964 GCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGT 33665905 Query 172024 TCCTATGGGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTAT 172083 | || ||||| ||||| |||||||||||| || || |||| ||||||||| || || | Sbjct 33665904 TACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGT 33665845 Query 172084 GGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTG 172143 || ||||| || || || | || | | | |||||||| ||| | | || |||| Sbjct 33665844 GGGCTTTTGTTGCTCACCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTG 33665785 Query 172144 AGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTG 172203 | |||| || |||| | || ||||| || ||| | |||||||| | |||| Sbjct 33665784 AACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTG 33665725 Query 172204 CAGTATTCACGAGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCAC 172263 | || || |||||||||| |||||| ||||||| | |||||||||| || | Sbjct 33665724 CTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGC 33665665 Query 172264 CTTCATTTGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATA 172323 || |||||||| || || || ||||| | || | || | || || || || ||| Sbjct 33665664 CTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATT 33665605 Query 172324 TAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTAT 172383 || | || ||||||||||||||||| || || ||| |||| || | || | ||| Sbjct 33665604 GGACATTGAACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTAT 33665545 Query 172384 GTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTG 172443 | || || |||||||| || ||| | || || || | |||||| || Sbjct 33665544 GCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGA---------------TG 33665500 Query 172444 AAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTT 172503 | | | | ||| |||| ||| | || || | || || || | |||||||||| Sbjct 33665499 --GTGATGGTGCAA-ATACA---TTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTT 33665446 Query 172504 ATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACA 172563 || ||| | || |||||| | || |||||||| || ||||| | || ||||| || | Sbjct 33665445 ATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATA 33665386 Query 172564 AAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTA 172623 || | | ||||| ||| ||||||| || ||||| || | ||| | |||| || Sbjct 33665385 AACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTC 33665326 Query 172624 TAGGTATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAA 172683 | || | || ||||| || | ||||| | || || ||||| || || || || || Sbjct 33665325 TTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCC 33665266 Query 172684 GAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAG 172743 | ||||| ||||| || || ||||| || ||||| ||||| || |||||| | || |||| Sbjct 33665265 GTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAG 33665206 Query 172744 GTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAG 172803 |||| | || |||||| | || ||||| || ||||| ||| || | ||||| || | Sbjct 33665205 GTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGG 33665146 Query 172804 AAGTCTTGCCACGAGGCAACGCACTATAA 172832 | || | ||||| || ||||| || ||| Sbjct 33665145 AGGTTCTACCACGTGGAAACGCTCTTTAA 33665117 >seq5 Length=46902585 Score = 219 bits (242), Expect = 5e-52 Identities = 409/601 (68%), Gaps = 21/601 (3%) Strand=Plus/Plus Query 172232 TCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGGTGTCGCAGCAATCTTTCG 172291 |||| ||||||| | |||||||||| || ||| |||||||| || || || ||||| Sbjct 22000793 TCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCG 22000852 Query 172292 TTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCATTTCATATGATGGG 172351 | || | || | || || || || ||| || | || ||||||||||||||||| Sbjct 22000853 ATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGG 22000912 Query 172352 TGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCAACAGTACAGAA 172411 || || ||| |||| || | || | ||||||| || |||||||| || ||| | || Sbjct 22000913 AGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGTGCTATTCATGGTGCTACTGTAGAAAA 22000972 Query 172412 CACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATTCAATCTACAACTTTCAG 172471 || || | |||||| ||| ||| ||| |||| ||| | Sbjct 22000973 TACTTTATTTGAAGATGG------------TGATGGTG-----CAAA-TACA---TTCCG 22001011 Query 172472 AGCATTCGATCCTACACAGGAAGAAGAAACTTATAGTATGATTACTGCTAACAGATTCTG 172531 || || | || || || | |||||||||||| ||| | || |||||| | || || Sbjct 22001012 TGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTG 22001071 Query 172532 GTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTACACTTCCTTATGTTGTT 172591 |||||| || ||||| | || ||||| || ||| | | ||||| ||| ||||||| || Sbjct 22001072 GTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATT 22001131 Query 172592 CGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTTGCACTTAACCT 172651 ||||| || | ||| | |||| || | || | || ||||| || | ||||| Sbjct 22001132 TGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCT 22001191 Query 172652 CAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTTGAAAC 172711 | || || ||||| || || || || || | ||||| ||||| || || ||||| || Sbjct 22001192 ACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGAC 22001251 Query 172712 CTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATGTCATCTGTCGA 172771 ||||| ||||| || |||||| | || |||||||| | || |||||| | || || Sbjct 22001252 TTTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGA 22001311 Query 172772 TCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAGGCAACGCACTATA 172831 ||| || ||||| ||| || | ||||| || || || | ||||| || ||||| || || Sbjct 22001312 TCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTA 22001371 Query 172832 A 172832 | Sbjct 22001372 A 22001372 >seq6538 Length=695 Score = 127 bits (140), Expect = 2e-24 Identities = 216/313 (69%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 171784 AAAGAGAATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCG 171843 ||| ||| | ||||| || | ||||| |||||| ||| || || ||||| || | | Sbjct 377 AAAAAGATTTATTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAG 436 Query 171844 GATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAG 171903 | ||||||||||| || || || |||||||| | || | || ||||||||| || Sbjct 437 GTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCAATTCCGCTTTGGGGGGTTGGTTCACAG 496 Query 171904 GAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAG 171963 | || || || || || |||||||| || ||||| | || || ||| | || || Sbjct 497 GTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTT 556 Query 171964 CAAACTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGT 172023 || |||||||| || ||||| || || |||| | | | | | ||| | | |||| Sbjct 557 GCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAAAAGTTTAGCGCATTTTTTGTTGT 616 Query 172024 TCCTATGGGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTAT 172083 | || ||||| ||||| |||||||| || | || |||| ||||||||| || || | Sbjct 617 TACTGTGGGGTCCTGAAGCACAAGGGGACTTCACTCGTTGGTGTCAATTAGGCGGTCTGT 676 Query 172084 GGAACTTTGTAGC 172096 || ||||| || Sbjct 677 GGGCTTTTGTTGC 689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570034376753040