Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq7 134 2e-26 seq3 100 4e-16 >seq7 Length=48366697 Score = 134 bits (148), Expect = 2e-26 Identities = 400/608 (66%), Gaps = 12/608 (2%) Strand=Plus/Plus Query 33298 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 33357 |||| || |||||||||||||||| || ||||||| || | |||||||| || Sbjct 33023932 ATCAGGCAGGCGAAATCGCAGTGCAAGCCTTCGTCTCGGGAGATCAACTCGTTGGAGAAG 33023991 Query 33358 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAA 33417 || | || ||||| || || ||||| |||||||| || || || ||| || || Sbjct 33023992 GTTAACCCAGGCATGAGCCCTCGCTTCTTAAGCCAGAAGATCGAGCAGAAGCTACCGGAG 33024051 Query 33418 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC-TCCATAACCGGCGCTGTC 33476 |||||||| ||||| || ||| ||||| | | ||||| | | | | | | | | Sbjct 33024052 AAGAAGATCCCTTCGACGCAAGCGAAGGCGACGATCCTCTCGGCGAAAGTCTGAGAT-CC 33024110 Query 33477 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33536 || |||||| | ||||| | ||||||||| || ||||| || ||||| || || Sbjct 33024111 ATCGATCCACGTCATGGCCCATTGGGCCTTCTTCGCGACGCAAGGGATGGTTTCAATCGC 33024170 Query 33537 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33596 || || | || | || || | || || | || || |||| || || || || Sbjct 33024171 GCGGAAAAGGTGGTCCCTCTCCTTGTTGTCCTTGATGTACGTGTCGAGCAGGAGGCTGTA 33024230 Query 33597 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33656 ||| || || || || || ||||| || ||||| || |||||||| | ||||||| Sbjct 33024231 CATCTCTGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAGGCACGCGCCTCGGA 33024290 Query 33657 AATCTGTACTTCTGTACA-AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGG 33715 | || || || | ||| || || || | ||| || || |||||||| || Sbjct 33024291 GACTTGCACGTC-GGACATGAACCGCGAGGCGAGATTCTCCAAAACGATTCCGTCTGAGG 33024349 Query 33716 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTC 33774 | || || || || | || ||||| || || | | || || | ||| || || | | Sbjct 33024350 CGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGTCGCTC-TCCGTCGTTGAGATTCTCC 33024408 Query 33775 CAATC---ATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCT 33831 || || |||| |||| || | || |||||||| | ||||| || || || || Sbjct 33024409 CAGTCGCGATTG---TCTTGGGAGAGGTCGACTTCTTCGGCGGTCCAGAAAGAGGCTTCG 33024465 Query 33832 GCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTT 33891 ||||| || ||||| | |||||| | |||||||| ||||| || ||||| | | Sbjct 33024466 GCCTTCTTGTACATCTCCCAGATCTGCGGGTATTGGATCGGGAACATGCAGAATCTGTCT 33024525 Query 33892 GGATTTGG 33899 || |||| Sbjct 33024526 GGGGTTGG 33024533 Score = 109 bits (120), Expect = 7e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 |||||| | ||||| | ||| ||||| || || || |||||| | ||| | || || Sbjct 27689544 AGTTCCAGAGTTAAAGAGGGTGGGAGATGCATGAGTGAACCATCGCTGAGACATTAAATG 27689485 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63730 ||| |||| | |||||| || |||||| || |||||| || || | || | ||| | Sbjct 27689484 GTAAGTCTGGACAGCTGAATCAATATCCTGTTTATGAATGCCAACAGAAACTCTCATGAG 27689425 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 |||||||||||| |||||||| | || | | ||| || | ||| ||| |||| | Sbjct 27689424 CATGTGCTGAGGCCTTTCAACCACTTTCCCATGGACTTTTAAAAGGTATGATCTTTCAAG 27689365 Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 ||| || ||||| || |||| ||| || || || |||||||| || Sbjct 27689364 AGTCTTGAAACCGAAGTAGTCATATTCGAAATCGCGGTCGTAAATGAT 27689317 Score = 84.2 bits (92), Expect = 3e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 63372 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63431 ||||| || || | || | ||| || | ||| | || | || ||| |||| |||||| Sbjct 27689858 CCTCCTTGGTCAACATAACGAGCAGTATCATTGAACACCCGCAGCATAGGAACAATACCA 27689799 Query 63432 TTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63491 || ||| ||||| || || || || |||||| | |||||||| || || || Sbjct 27689798 TTAGATTCTCCATTAGTGCCACGAATGTAACTTCCAGTAGCACGAATGTTGTGAACAGAA 27689739 Query 63492 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATA 63551 | ||| || ||||| || |||| || | ||| || ||| ||||| || || || Sbjct 27689738 ACACCAATACCCCCAGCTGATTTACTTATAACTGCACACTCTTTCAACGTATCGTAAATC 27689679 Query 63552 CCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592 ||||| ||||||||||| ||||| | ||||| ||||| Sbjct 27689678 CCCTCAATGCTATCATCCTTCATGCAGATAAGAAAGCAGCT 27689638 >seq3 Length=64984695 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 |||||| | ||| || | || |||||||| || ||||||||| | ||| | || || Sbjct 53582562 AGTTCCTGAATTGAAGAGAGTCGGAGAAGCATGAGTAAACCATCGCTGAGACATTAAATG 53582621 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63730 ||| || | || || || || ||||| || ||||| || || | || | ||| | Sbjct 53582622 GTAAGTTTTGATTGCGGAATCAATATCTTCTTTGTGAATGCCAACAGAAACCCTCATGAG 53582681 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 ||||||||||||||| ||||| | || | | ||| || | ||| ||| | || | Sbjct 53582682 CATGTGCTGAGGTCTCTCAACCACTTTCCCATGGACTTTTAAGAGGTATGATCTCTCAAG 53582741 Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 |||||| || ||||| |||| |||| ||| || || || ||||| || Sbjct 53582742 AGTTTTGAACCCAAAGTAGTCGTATTCAAAATCACGATCATAAATGAT 53582789 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| || || | ||| | ||| || | ||| |||| | || |||||||| |||||| Sbjct 53582236 TCCTCCTTGGTCAACGTAGCGAGCAGTATCATTGAAAACACGCAGCATTGGAAGAATACC 53582295 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || ||| | ||||| || || || || |||||| | ||||| || || || ||| Sbjct 53582296 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGA 53582355 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | ||| || ||||| || |||| || | || || ||| || || ||||| || Sbjct 53582356 AACACCGATACCCCCAGCTGATTTACTTATAACAGCACACTCTTTCAAGGTATCATATAT 53582415 Query 63551 ACCCTCTATGCTATCATCGATCATG 63575 ||||| ||||||||||| ||||| Sbjct 53582416 TCCCTCGATGCTATCATCCTTCATG 53582440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622691121979760