Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq8 104 2e-17 seq3 96.9 3e-15 seq6 91.5 1e-13 seq4 86.0 6e-12 seq7 84.2 2e-11 >seq8 Length=41758685 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || ||| | |||||| |||| | || || Sbjct 33346034 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAAACAATCACCCTCGAGGTCGAGTCC 33346093 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||||||| | ||||| ||||| ||||| |||||||| |||||||| Sbjct 33346094 TCCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCTCCCGAC 33346153 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || |||| |||| || ||| || || |||||||| | | | || |||||| Sbjct 33346154 CAGCAGCGACTGATTTTCGCCGGGAAGCAGCTCGAAGACGGACGCACGCTCGCCGACTAC 33346213 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || || | ||||| ||||| Sbjct 33346214 AACATCCAGAAGGAGTCGACGCTTCATCTCGTCCT 33346248 >seq3 Length=64984695 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/220 (70%), Gaps = 1/220 (0%) Strand=Plus/Plus Query 26762 AAACAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAG 26820 || |||| ||||| | || || ||||| |||| || || | |||||| ||||| | | Sbjct 15816412 AAGCAAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATCACCCTCGAAGTCG 15816471 Query 26821 AATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTC 26880 |||| |||||||||||| | ||||| ||||| ||||| ||||| || |||| Sbjct 15816472 AATCCTCCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTC 15816531 Query 26881 CCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCG 26940 | || || || |||| || | || ||| || || || || || | | | | || || Sbjct 15816532 CGGACCAGCAGCGACTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACCCTCGCCG 15816591 Query 26941 ACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| ||||| || || || || ||| |||| || ||||| Sbjct 15816592 ACTACAACATCCAGAAGGAGTCGACTCTCCACCTCGTCCT 15816631 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || ||||| | |||||| |||| | ||| Sbjct 16419421 ATGCAGATCTTCGTTAAGACTCTCACGGGAAAGACCATCACCCTCGAGGTGGAAAGCTCT 16419362 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | || ||| |||||| ||||| ||||| || ||||||||||| Sbjct 16419361 GACACCATTGACAACGTTAAAGCCAAGATTCAGGACAAGGAAGGTATCCCTCCCGATCAG 16419302 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || ||||||| || ||| || || || ||||| | |||| | |||||| ||| Sbjct 16419301 CAGAGGCTCATTTTCGCCGGAAAGCAGCTTGAAGACGGCAGAACTTTGGCCGACTACAAC 16419242 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || || ||||| | ||||| || || || ||| | || || Sbjct 16419241 ATCCAGAAGGAGTCTACGCTTCATCTCGTTCTCAGGCTTCGTGGTGG 16419195 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| | || ||||| | |||||| | || | ||| Sbjct 34862065 ATGCAGATCTTTGTGAAAACCCTCACCGGAAAGACCATCACCCTTGAGGTTGAAAGCTCT 34862006 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || ||| ||||| ||||| ||||| || ||||| ||||| Sbjct 34862005 GACACCATCGACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAG 34861946 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || ||||| | || ||| || || || ||||| | || | | |||||| ||| Sbjct 34861945 CAGAGGCTCATCTTCGCCGGAAAGCAGCTTGAAGACGGCAGGACTTTGGCCGACTACAAC 34861886 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| || ||||| |||| ||||| || | || | ||||| Sbjct 34861885 ATCCAAAAGGAGTCTACGCTCCACTTGGTCTTGCGTCTACGTGGAGG 34861839 Score = 82.4 bits (90), Expect = 7e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || ||||| ||||| ||||||| | || | || | Sbjct 11141559 ATGCAAATCTTCGTGAAGACTTTAACAGGAAAGACGATCACTCTAGAGGTGGAGAGTTCC 11141500 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | || ||| || || |||||||| || || ||||| || || Sbjct 11141499 GACACCATTGACAACGTGAAAGCCAAAATCCAGGACAAAGAGGGTATTCCTCCGGACCAG 11141440 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 || | ||||| | || |||||||| || || |||| | | | | | || |||||||| Sbjct 11141439 CAGCGTCTCATCTTCGCTGGCAAACAGCTTGAGGATGGTCGTA-CTTTGGCTGACTATAA 11141381 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986 ||| || |||||||| ||| | || |||| || || || Sbjct 11141380 CATCCAGAAAGAATCAACTCTTCACTTGGTGCTCAGGCT 11141342 >seq6 Length=39822476 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || | |||||| |||| | || || Sbjct 23704184 AAGATGCAGATCTTCGTTAAAACCCTAACGGGGAAGACCATCACCCTCGAGGTCGAGTCC 23704243 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||||||| | ||||| ||||| ||||| ||||| || ||||| || Sbjct 23704244 TCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGAC 23704303 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || |||| || | || ||| ||||| || ||||| | | | | || |||||| Sbjct 23704304 CAGCAGCGACTGATCTTCGCCGGGAAACAGCTGGAAGACGGCCGTACCCTCGCCGACTAC 23704363 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || || | ||||| ||||| Sbjct 23704364 AACATCCAGAAGGAGTCGACGCTTCATCTCGTCCT 23704398 >seq4 Length=53719093 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||||||||| || || || ||||| ||||| ||||| | || ||| || || || ||| Sbjct 8022755 GACAAAGAAGGTATTCCACCAGATCAGCAAAGGCTCATCTTCGCCGGTAAGCAGCTTGAA 8022696 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||| |||| | | || || ||||| || ||||| |||||| | ||||| ||| || Sbjct 8022695 GATGGCAGAACCCTGGCGGATTACAACATCCAGAAAGAGTCTACTCTTCATCTCGTCTTG 8022636 Query 26982 AGACT 26986 || || Sbjct 8022635 AGGCT 8022631 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || |||||||| |||| | ||||| Sbjct 24867385 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTCGAGGTCGAATCC 24867326 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||||||| | ||||| ||||| ||||| ||||| || || || || Sbjct 24867325 TCCGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCGCCGGAC 24867266 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || | || || | || ||| || || ||||| || | || | | || |||||| Sbjct 24867265 CAGCAGCGGCTGATCTTCGCCGGGAAGCAGCTCGAGGACGGCAGGACCCTCGCCGACTAC 24867206 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || || | || || ||||| Sbjct 24867205 AACATCCAGAAGGAGTCGACGCTTCACCTCGTCCT 24867171 >seq7 Length=48366697 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||||||||| ||||| || ||||| || || || || | || || || ||||| ||| Sbjct 15363197 GACAAAGAAGGAATACCGCCGGATCAGCAGAGGCTGATCTTCGCTGGGAAGCAACTAGAA 15363256 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 || | ||||| | | ||||| ||||| || ||||| || ||| | || ||||| || Sbjct 15363257 GACGGTAGAACCCTTGCGGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCTTG 15363316 Query 26982 AGACTTAGAGGAGG 26995 || ||||| || || Sbjct 15363317 AGGCTTAGGGGTGG 15363330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478465633853920