Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1 104 6e-17 seq7 98.7 3e-15 seq3 95.1 3e-14 >seq1 Length=43764888 Score = 104 bits (114), Expect = 6e-17 Identities = 115/151 (76%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||||||||| ||||| || | | | ||| |||||||| || | || |||||| Sbjct 2358916 ATGGCACTTCCTCCATGCCA-CATGTTTGCTCAGTTTTACGTTGCAAATGGAGAGCTTTC 2358974 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 ||| |||||||||||||| || |||||||| ||||||||||| |||||||| || || Sbjct 2358975 ATGTCAAATGTATCAGCGCTCAGCTGATATGGGTCTTGGTGTACCGTTTAACATCGCCTC 2359034 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||| | || ||||| || | |||||||| Sbjct 2359035 GTACTCCCTTCTTACATGTATCCTCGCTCAT 2359065 >seq7 Length=48366697 Score = 98.7 bits (108), Expect = 3e-15 Identities = 114/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||||||||| || || || | | | ||| ||||||| ||| |||| |||||| Sbjct 46712539 ATGGCACTTCCTCCTTGCCA-CATGTTTGCACAGTTTTTTGTTGCAAACGGAGAGCTTTC 46712481 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 || |||||||||||||| || || ||||| ||||||||||| |||||||| ||||| Sbjct 46712480 GTGTCAAATGTATCAGCGGTCAGCAGATATGGGTCTTGGTGTACCGTTTAACATTGCCTC 46712421 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||| |||| ||| | ||| | | |||||| Sbjct 46712420 ATACTCACTTCTTTCATGCATCCTAGCTCAT 46712390 Score = 89.7 bits (98), Expect = 1e-12 Identities = 167/239 (70%), Gaps = 11/239 (5%) Strand=Plus/Plus Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||||||| | |||||||| ||| ||| ||||| || | || || | || | Sbjct 27689641 TGCTTTCTTATCTGCATGAAGGATGATAGCATTGAGGGGATTTACGATACGTTGAAAGAG 27689700 Query 363667 TGTGCTCTTATTTCCAAG--AAT--GCAGGCGGAATTGGTGTATCGATCCACAATGTTCG 363722 ||||| |||| ||| ||| || || || |||||||| || | ||||| |||| Sbjct 27689701 TGTGCAGTTAT----AAGTAAATCAGCTGGGGGTATTGGTGTTTCTGTTCACAACATTCG 27689756 Query 363723 TGC-ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGC 363781 ||| || | | ||||||||||| ||||| ||| | || ||||| | ||||| |||| Sbjct 27689757 TGCTACTGGA-AGTTACATTCGTGGCACTAATGGAGAATCTAATGGTATTGTTCCTATGC 27689815 Query 363782 TTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 | || ||||| | ||||||| | || || ||||| || || || ||| | |||||| Sbjct 27689816 TGCGGGTGTTCAATGATACTGCTCGTTATGTTGACCAAGGAGGTGGCAAGAG-AAAGGG 27689873 >seq3 Length=64984695 Score = 95.1 bits (104), Expect = 3e-14 Identities = 159/224 (71%), Gaps = 11/224 (5%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 |||||||| ||| ||||||||| || | ||| || | || | |||||| |||| Sbjct 53582439 ATGAAGGATGATAGCATCGAGGGAATATATGATACCTTGAAAGAGTGTGCTGTTAT---- 53582384 Query 363682 AAG--AAT--GCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA-CAGAACAGTT 363736 ||| ||| || || || || ||||| || | ||||| | |||||| | | | |||| Sbjct 53582383 AAGTAAATCAGCTGGGGGTATCGGTGTTTCAGTTCACAACATCCGTGCAACTGGA-AGTT 53582325 Query 363737 ACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACA 363796 ||||||| |||||| ||| || ||||| | |||| ||||| ||||| || | Sbjct 53582324 ACATTCGTGGCACAAATGGAACATCTAATGGTATTCTTCCAATGCTGCGTGTTTTCAATG 53582265 Query 363797 ATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||||||| | ||||| ||||| || ||||| ||| | |||||| Sbjct 53582264 ATACTGCTCGCTACGTTGACCAAGGAGGAGGCAAGAG-AAAGGG 53582222 Score = 93.3 bits (102), Expect = 1e-13 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||| ||||| || || || | | | ||| ||||| ||||| || ||| ||| || Sbjct 32924778 ATGGCGCTTCCTCCGTGCCA-CATGTTTGCGCAGTTCTATGTGGCGGAAGGGGAGCTCTC 32924720 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 ||||| ||||||||||| || || ||||| || |||||||| |||||||| || || Sbjct 32924719 GTGCCAGATGTATCAGCGTTCGGCGGATATGGGCCTTGGTGTGCCGTTTAACATCGCTTC 32924660 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCA 111820 ||| | || ||||||||| | ||||||| Sbjct 32924659 CTACTCTCTTCTTACTTGCATGCTCGCTCA 32924630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302804429516852