Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq8 113 4e-20 seq4 109 5e-19 seq6 104 2e-17 seq5 98.7 9e-16 seq3 96.9 3e-15 seq9 86.0 5e-12 >seq8 Length=41758685 Score = 113 bits (124), Expect = 4e-20 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| |||| || ||| | || ||| |||| |||||| || Sbjct 33346034 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAAACAATCACCCTCGAGGTCGAGTCC 33346093 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | ||||| ||||| ||||| ||||| || |||||||| Sbjct 33346094 TCCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCTCCCGAC 33346153 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| ||||||||| || ||| ||||| |||||||| | | | || ||| || Sbjct 33346154 CAGCAGCGACTGATTTTCGCCGGGAAGCAGCTCGAAGACGGACGCACGCTCGCCGACTAC 33346213 Query 24168 AACATTCAAAAAGAATCTACAATTCAT 24194 ||||| || || || || || ||||| Sbjct 33346214 AACATCCAGAAGGAGTCGACGCTTCAT 33346240 Score = 95.1 bits (104), Expect = 1e-14 Identities = 122/167 (73%), Gaps = 1/167 (1%) Strand=Plus/Plus Query 23982 CCAAACAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGT 24040 ||| ||||| ||||| | || || ||||| | || || || | || ||| |||| || Sbjct 28102308 CCACACAAAGATGCAGATCTTCGTGAAAACCCTGACCGGGAAGACCATCACCCTCGAGGT 28102367 Query 24041 CGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACC 24100 |||| || |||||||||||| | ||||| ||||| ||||||||||| || || Sbjct 28102368 CGAGTCCTCCGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCC 28102427 Query 24101 TCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||| ||||| ||| || |||| | || || || || |||||||||| Sbjct 28102428 TCCGGATCAGCAGCGATTGATCTTCGCTGGAAAACAGCTCGAAGATG 28102474 >seq4 Length=53719093 Score = 109 bits (120), Expect = 5e-19 Identities = 155/214 (72%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCG-AGGCCAA 24049 ||||| | ||||| || || || ||||||||| | ||||| | || || | || | Sbjct 28156292 ATGCAGATCTTTGTCAAGACGTTGACTGGAAAAACTATTACATTGGAGGTGGGAGAGCTC 28156351 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||| || || || | |||||| |||||| ||||| || || || ||||| || || Sbjct 28156352 CGATACTATTGACAACGTCAAAGCAAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCA 28156411 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCG-ATTATA 24168 ||||| |||| | || ||||||||| || ||||| | ||||| | | ||| | || | Sbjct 28156412 GCAGAGGTTGATCTTCGCCGGCAAGCAGCTTGAAGACGGCAGAA-CATTGGCGGACTACA 28156470 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||||||||| || |||||| |||| || ||||| Sbjct 28156471 ACATTCAAAAGGAGTCTACACTTCACTTGGTGTT 28156504 Score = 102 bits (112), Expect = 7e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| |||| || || |||| ||| |||| ||||| || Sbjct 24867385 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTCGAGGTCGAATCC 24867326 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | ||||| ||||| ||||| |||||||| || || || Sbjct 24867325 TCCGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCGCCGGAC 24867266 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | ||||| | || ||| ||||| ||||| || | ||| | | || ||| || Sbjct 24867265 CAGCAGCGGCTGATCTTCGCCGGGAAGCAGCTCGAGGACGGCAGGACCCTCGCCGACTAC 24867206 Query 24168 AACATTCAAAAAGAATCTACAATTCA 24193 ||||| || || || || || |||| Sbjct 24867205 AACATCCAGAAGGAGTCGACGCTTCA 24867180 >seq6 Length=39822476 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| |||| || || | || ||| |||| |||||| || Sbjct 23704184 AAGATGCAGATCTTCGTTAAAACCCTAACGGGGAAGACCATCACCCTCGAGGTCGAGTCC 23704243 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | ||||| ||||| ||||| |||||||| ||||| || Sbjct 23704244 TCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGAC 23704303 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| ||||||| | || ||| || || || ||||| | | | | | || ||| || Sbjct 23704304 CAGCAGCGACTGATCTTCGCCGGGAAACAGCTGGAAGACGGCCGTACCCTCGCCGACTAC 23704363 Query 24168 AACATTCAAAAAGAATCTACAATTCAT 24194 ||||| || || || || || ||||| Sbjct 23704364 AACATCCAGAAGGAGTCGACGCTTCAT 23704390 >seq5 Length=46902585 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 23985 AACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAG 24044 || |||||||| | ||||| ||||| |||| || || |||| ||| | || ||||| Sbjct 12956217 AAGAAAATGCAGATCTTTGTGAAAACCCTAACGGGGAAGACGATAACCTTAGAGGTCGAA 12956276 Query 24045 GCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCC 24104 | |||||| ||||| | || || ||||| ||||| ||||| || || || Sbjct 12956277 TCATCCGACACGATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAAGGGATCCCACCG 12956336 Query 24105 GATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGAT 24164 ||||| ||| ||||||| | || ||| ||||| || ||||| | || | || |||| Sbjct 12956337 GATCAGCAGCGACTGATCTTCGCCGGGAAGCAGCTGGAAGACGGAAGGACACTCGCCGAT 12956396 Query 24165 TATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || ||||| || || || || || |||| | || | | ||||||||||| Sbjct 12956397 TACAACATCCAGAAGGAGTCGACGCTTCACCTGGTTCTCCGTCTGAGAGGAGGA 12956450 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || ||||| |||||| |||| || |||| || ||| | | Sbjct 33724869 ATGCAGATCTTTGTCAAGACCTTAACGGGAAAAACGATCACACTCGAGGTGGAGAGCTCC 33724928 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| || || || || || || || Sbjct 33724929 GACACCATCGATAACGTCAAGGCCAAGATACAAGACAAGGAGGGAATCCCGCCTGACCAG 33724988 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||| | | ||||||||| || || |||| | | | |||||| ||| Sbjct 33724989 CAGCGTTTGATCTTTGCCGGCAAGCAGCTTGAGGATGGTCGTACATTGGCCGATTACAAC 33725048 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || || ||||| ||||| | |||||| | || | ||||| Sbjct 33725049 ATTCAGAAGGAGTCTACTCTTCATCTCGTGTTACGTCTGCGTGGAGG 33725095 >seq3 Length=64984695 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/205 (71%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 23984 AAACAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCG 24042 || |||| ||||| | || || ||||| |||| || || | || ||| ||||||||| Sbjct 15816412 AAGCAAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATCACCCTCGAAGTCG 15816471 Query 24043 AGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTC 24102 | || |||||||||||| | ||||| ||||| ||||| |||||||| |||| Sbjct 15816472 AATCCTCCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTC 15816531 Query 24103 CCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCG 24162 | || || ||| ||||||| | || ||| ||||| || || || | | | | || || Sbjct 15816532 CGGACCAGCAGCGACTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACCCTCGCCG 15816591 Query 24163 ATTATAACATTCAAAAAGAATCTAC 24187 | || ||||| || || || || || Sbjct 15816592 ACTACAACATCCAGAAGGAGTCGAC 15816616 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || ||||| | || ||| |||| || || | Sbjct 16419421 ATGCAGATCTTCGTTAAGACTCTCACGGGAAAGACCATCACCCTCGAGGTGGAAAGCTCT 16419362 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || ||| |||||| ||||| ||||| || ||||||||||| Sbjct 16419361 GACACCATTGACAACGTTAAAGCCAAGATTCAGGACAAGGAAGGTATCCCTCCCGATCAG 16419302 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || |||| || ||| ||||| || ||||| | ||||| | ||| || ||| Sbjct 16419301 CAGAGGCTCATTTTCGCCGGAAAGCAGCTTGAAGACGGCAGAACTTTGGCCGACTACAAC 16419242 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 || || || || ||||| ||||| Sbjct 16419241 ATCCAGAAGGAGTCTACGCTTCAT 16419218 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || || ||||| | || || | || || ||| | | Sbjct 16419193 ATGCAGATCTTTGTCAAGACCTTGACCGGAAAGACCATCACTTTGGAGGTTGAGAGCTCC 16419134 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| ||||| ||||| |||||||| ||||| || || Sbjct 16419133 GACACCATCGACAACGTCAAAGCCAAGATCCAAGACAAGGAAGGCATTCCTCCGGACCAG 16419074 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 |||||| |||| | | ||| ||||| || ||||| | | || | ||| || || || Sbjct 16419073 CAGAGATTGATCTTTGCCGGAAAGCAGCTTGAAGACGGTCG-TACCTTAGCTGACTACAA 16419015 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||| || || || ||||| |||| || ||| Sbjct 16419014 CATCCAGAAGGAGTCTACGCTTCACTTGGTG 16418984 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | || ||||| | || ||| | || || || | Sbjct 34862065 ATGCAGATCTTTGTGAAAACCCTCACCGGAAAGACCATCACCCTTGAGGTTGAAAGCTCT 34862006 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || ||| ||||| ||||| |||||||| ||||| ||||| Sbjct 34862005 GACACCATCGACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAG 34861946 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | || ||| ||||| || ||||| | ||| | | ||| || ||| Sbjct 34861945 CAGAGGCTCATCTTCGCCGGAAAGCAGCTTGAAGACGGCAGGACTTTGGCCGACTACAAC 34861886 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||| || ||||| Sbjct 34861885 ATCCAAAAGGAGTCTAC 34861869 >seq9 Length=54679868 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || ||||| | || || |||| || ||| | | Sbjct 23042660 ATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACACTCGAGGTGGAGAGCTCC 23042601 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || ||| ||||| ||||| || || || |||||||| || Sbjct 23042600 GACACCATCGACAACGTGAAAGCTAAGATCCAAGACAAGGAGGGTATTCCTCCCGACCAG 23042541 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||| | || ||||||||| ||||| |||| | | | | || || ||| Sbjct 23042540 CAGCGTTTGATCTTCGCCGGCAAGCAGCTCGAGGATGGTCGTACCTTGGCTGACTACAAC 23042481 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||||| ||||| || || |||| || ||||| Sbjct 23042480 ATTCAGAAAGAGTCGACCCTTCACTTGGTGTT 23042449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429763682457330