Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq3 84.2 2e-11 seq4 82.4 6e-11 >seq3 Length=64984695 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || || || || ||||||||||| ||||| ||| |||| ||| | Sbjct 16419421 ATGCAGATCTTCGTTAAGACTCTCACGGGAAAGACCATCACCCTCGAGGTGGAAAGCTCT 16419362 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| || ||||| || ||| || ||| || || ||||| |||| ||||| Sbjct 16419361 GACACCATT-GACAACGTTAAAGCCAAGATTCAGGACAAGGAAGGTATCCCTCCCGATCA 16419303 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || || |||| || || || || | ||||| | || ||| ||||||| || || Sbjct 16419302 GCAGAGGCTCATTTTCGCCGGAAAGCAGCTTGAAGACGGCAGAACTTTGGCCGACTACAA 16419243 Query 115465 CATTCAAAAAGAGTCTAC 115482 ||| || || |||||||| Sbjct 16419242 CATCCAGAAGGAGTCTAC 16419225 >seq4 Length=53719093 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/229 (69%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGG-AGTCCAG 115344 ||||| || |||||||| ||| | || |||||||| ||||| | || || || | Sbjct 28156292 ATGCAGATCTTTGTCAAGACGTTGACTGGAAAAACTATTACATTGGAGGTGGGAGAGCTC 28156351 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||| ||| ||| |||| || ||| ||| || || || || || | || || | Sbjct 28156352 CGATACTATTG-ACAACGTCAAAGCAAAGATCCAAGACAAGGAGGGTATTCCTCCGGACC 28156410 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| || | || | || ||||| || | ||||| | || ||| |||| || || | Sbjct 28156411 AGCAGAGGTTGATCTTCGCCGGCAAGCAGCTTGAAGACGGCAGAACATTGGCGGACTACA 28156470 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||||| |||||||| | || |||||||| | |||| ||||| Sbjct 28156471 ACATTCAAAAGGAGTCTACACTTCACTTGGTGTTGCGTCTGCGTGGAGG 28156519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425173522922320