Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq7 114 2e-20 seq3 105 8e-18 >seq7 Length=48366697 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 |||||| | ||||| | ||| ||||| || ||||| |||||| | ||| | || || Sbjct 27689544 AGTTCCAGAGTTAAAGAGGGTGGGAGATGCATGAGTGAACCATCGCTGAGACATTAAATG 27689485 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 ||| |||| | |||||| || |||||| || |||||| || || | || | ||| | Sbjct 27689484 GTAAGTCTGGACAGCTGAATCAATATCCTGTTTATGAATGCCAACAGAAACTCTCATGAG 27689425 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 |||||||||||| |||||||| | || | | ||| || | ||| ||| |||| | Sbjct 27689424 CATGTGCTGAGGCCTTTCAACCACTTTCCCATGGACTTTTAAAAGGTATGATCTTTCAAG 27689365 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||| || ||||| || |||| ||| || || || |||||||| || Sbjct 27689364 AGTCTTGAAACCGAAGTAGTCATATTCGAAATCGCGGTCGTAAATGAT 27689317 Score = 113 bits (124), Expect = 6e-20 Identities = 385/588 (65%), Gaps = 14/588 (2%) Strand=Plus/Plus Query 32655 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 32714 |||| || |||||||||||||| | || ||||||| || || |||||||| || Sbjct 33023932 ATCAGGCAGGCGAAATCGCAGTGCAAGCCTTCGTCTCGGGAGATCAACTCGTTGGAGAAG 33023991 Query 32715 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGA 32773 || | || ||||| || || ||||| |||||||| || || || ||| | | | || || Sbjct 33023992 GTTAACCCAGGCATGAGCCCTCGCTTCTTAAGCCAGAAGATCGA-GCAGAAGCTACCGGA 33024050 Query 32774 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTC-TCCATAACCGGCGCTGT 32832 ||||| || ||||| || || ||||| | | ||||| | | | | | | | Sbjct 33024051 GAAGAAGATCCCTTCGACGCAAGCGAAGGCGACGATCCTCTCGGCGAAAGTCTGAGAT-C 33024109 Query 32833 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 32892 ||| |||||| | ||||| | ||||||||| || ||||| || || || || | Sbjct 33024110 CATCGATCCACGTCATGGCCCATTGGGCCTTCTTCGCGACGCAAGGGATGGTTTCAATCG 33024169 Query 32893 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 32952 | || || | || | || || | || || | || || || | || || || | Sbjct 33024170 CGCGGAAAAGGTGGTCCCTCTCCTTGTTGTCCTTGATGTACGTGTCGAGCAGGAGGCTGT 33024229 Query 32953 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGG 33012 |||| || || || || || ||||| || || || || ||||||||| | ||||||| Sbjct 33024230 ACATCTCTGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAGGCACGCGCCTCGG 33024289 Query 33013 TAATCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 33071 | || || || | ||| || || || | ||| || || |||||||| | Sbjct 33024290 AGACTTGCACGTC-GGACATGAACCGCGAGGCGAGATTCTCCAAAACGATTCCGTCTGAG 33024348 Query 33072 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATT 33130 || || || || || | || ||||| || || | | || || | ||| || || | Sbjct 33024349 GCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGTCGCTC-TCCGTCGTTGAGATTCTC 33024407 Query 33131 CCAATC---ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 33187 ||| || |||| |||| || | || |||||||| | ||||| || || || || Sbjct 33024408 CCAGTCGCGATTG---TCTTGGGAGAGGTCGACTTCTTCGGCGGTCCAGAAAGAGGCTTC 33024464 Query 33188 TGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 33235 ||||| || ||||| | |||||| | | ||||| || || || || Sbjct 33024465 GGCCTTCTTGTACATCTCCCAGATCTGCGGGTATTGGATCGGGAACAT 33024512 >seq3 Length=64984695 Score = 105 bits (116), Expect = 8e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 |||||| | ||| || | || |||||||| |||||||||||| | ||| | || || Sbjct 53582562 AGTTCCTGAATTGAAGAGAGTCGGAGAAGCATGAGTAAACCATCGCTGAGACATTAAATG 53582621 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 ||| || | || || || || ||||| || ||||| || || | || | ||| | Sbjct 53582622 GTAAGTTTTGATTGCGGAATCAATATCTTCTTTGTGAATGCCAACAGAAACCCTCATGAG 53582681 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 ||||||||||||||| ||||| | || | | ||| || | ||| ||| | || | Sbjct 53582682 CATGTGCTGAGGTCTCTCAACCACTTTCCCATGGACTTTTAAGAGGTATGATCTCTCAAG 53582741 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 |||||| || ||||| |||| |||| ||| || || || ||||| || Sbjct 53582742 AGTTTTGAACCCAAAGTAGTCGTATTCAAAATCACGATCATAAATGAT 53582789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633371529725600