Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1 125 6e-24 seq3 122 8e-23 seq9 120 3e-22 seq5 120 3e-22 seq4 98.7 9e-16 seq8 93.3 4e-14 >seq1 Length=43764888 Score = 125 bits (138), Expect = 6e-24 Identities = 162/221 (73%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||||||||| || || | ||||| | || |||||| || Sbjct 35467011 ATGCAAATCTTCGTCAAGACTTTGACAGGAAAGACGATCACGCTAGAGGTGGAGAGTTCC 35467070 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || |||| |||||| ||||| || || ||||| || ||| Sbjct 35467071 GACACCATTGA--CAATGTGAAAGC-CAAAATCCAGGACAAGGAGGGTATTCCTCCCGAC 35467127 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || |||| ||||| || || ||||| ||||||| | || ||| ||||||| Sbjct 35467128 CAGCAGAGGCTTATCTTTGCTGGAAAGCAATTGGAAGATGGCAGGACCTTGGCCGATTAC 35467187 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 || ||||| || || || ||||| || || || || ||||| Sbjct 35467188 AACATTCAGAAGGAGTCTACGCTTCACTTGGTCCTCAGGCT 35467228 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||| || ||||| ||||| || || | ||||| | || || || || Sbjct 35466783 ATGCAAATATTCGTTAAGACGTTGACGGGAAAGACGATCACTTTGGAGGTTGAAAGCTCC 35466842 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| || || || |||| || ||| |||||||| || || ||||| ||| Sbjct 35466843 GACACTATTGA--CAATGTCAAAGC-CAAGATCCAAGACAAAGAGGGTATCCCACCAGAC 35466899 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || ||||| || || || | || |||| |||||| ||| |||||| Sbjct 35466900 CAGCAGAGGTTGATCTTTGCTGGAAAGCAGCTCGAGGATGGTCGCACCTTGGCAGATTAC 35466959 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || || || || || || | ||| | ||||| Sbjct 35466960 AACATCCAGAAGGAATCTACTCTTCACTTGGTCCTGCGTCTACGTGGAGG 35467009 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| | ||||| || | |||||| | || || ||| || Sbjct 35467239 ATGCAAATATTTGTGAAGACCCTTACCGGCAAGACTATCACATTGGAGGTTGAGAGCTCA 35467298 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||| ||||| ||||| || ||||| Sbjct 35467299 GACACCATTGACAACGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCTCCGGACCAG 35467358 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || || || || | || |||| ||||||| | | || ||||| Sbjct 35467359 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGCACTCTTGCTGACTACAAC 35467418 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 || || || || || || || || || ||||| ||||| Sbjct 35467419 ATCCAGAAGGAGTCGACACTTCACTTGGTGCTCAGGCT 35467456 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || ||| | ||||| || ||||||| |||| ||||| ||| Sbjct 35466555 ATGCAGATCTTTGTGAAAACTCTCACCGGAAAGACCATCACCCTCGAGGTGGAAAGCTCT 35466614 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || ||||| | ||| || ||| || || || || || ||||| ||||| Sbjct 35466615 GATACCATCGACAACGTTAAGGCCAAGATCCAGGATAAGGAGGGAATCCCACCGGACCAG 35466674 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || || || |||| | ||| | | || ||||| Sbjct 35466675 CAGAGGCTCATCTTTGCCGGCAAGCAGTTGGAGGATGGAAGAACTCTTGCGGACTACAAC 35466734 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 || || || || || || || ||| | || || ||||| Sbjct 35466735 ATCCAGAAGGAGTCGACTCTTCATCTCGTCCTCAGGCT 35466772 >seq3 Length=64984695 Score = 122 bits (134), Expect = 8e-23 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| | ||||| || |||||||| | || |||||| || Sbjct 16418965 ATGCAGATCTTCGTGAAGACTCTTACCGGCAAGACCATCACACTGGAGGTGGAGAGCTCC 16418906 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| || | || ||||| || ||| ||||||||||| || || || ||||| Sbjct 16418905 GACACTATTGA-TAACGTGAAGGCCAAGATCCAAGACAAAGAAGGCATCCCTCCGGACCA 16418847 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || || ||||| || | || |||| |||||| | | || ||||| Sbjct 16418846 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGCACCTTAGCAGACTACAA 16418787 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 |||||||| || || || || || || || |||||||| Sbjct 16418786 CATTCAAAAGGAGTCGACCCTTCACTTGGTCCTAAGGCT 16418748 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| ||||| || || | || || | || |||||| || Sbjct 34861381 ATGCAAATTTTTGTCAAGACCTTGACGGGGAAGACGATTACTTTGGAGGTGGAGAGCTCA 34861322 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || |||| || ||| ||||| || ||||| ||||| ||||| Sbjct 34861321 GACACTATTGACAACGTGAAAGCCAAGATCCAAGACAAGGAGGGGATCCCACCGGACCAG 34861262 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || || || |||| | ||| | | || ||||| Sbjct 34861261 CAGAGGTTGATCTTTGCCGGCAAGCAGTTGGAGGATGGAAGGACTCTAGCTGACTACAAC 34861202 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || |||||||| ||||| || | || || | ||| | ||||| Sbjct 34861201 ATCCAGAAAGAATCTACGCTTCACCTGGTCTTACGTCTACGTGGAGG 34861155 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||||||| || | ||||| | || |||||| ||| Sbjct 34861609 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACTATCACTTTGGAGGTGGAGAGCTCT 34861550 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || | ||| || ||| || || || || || ||||| ||||| Sbjct 34861549 GACACTATTGATAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATCCCACCGGACCAG 34861490 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || || || |||| | ||| | | || ||||| Sbjct 34861489 CAGAGGTTGATCTTTGCCGGCAAGCAGTTGGAGGATGGAAGGACTCTTGCTGACTACAAC 34861430 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 || || |||||||| || || ||| | || || ||||| Sbjct 34861429 ATCCAGAAAGAATCTACCCTCCATCTCGTCCTCAGGCT 34861392 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| || | ||||| | || |||||| ||| Sbjct 11141787 ATGCAGATCTTCGTCAAGACCCTTACCGGAAAGACGATCACTTTGGAGGTGGAGAGCTCT 11141728 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | || | ||| || ||| || || || || || ||||| ||||| Sbjct 11141727 GACACCATCGA-TAACGTTAAGGCCAAGATCCAGGATAAGGAGGGAATCCCACCGGACCA 11141669 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||||||||| || || || |||| | || ||| ||| ||||| Sbjct 11141668 GCAGAGGTTGATCTTTGCCGGCAAGCAGTTGGAGGATGGCAGGACCTTGGCCGACTACAA 11141609 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||||| ||||| || || || || Sbjct 11141608 CATTCAGAAAGAGTCGACCCTTCA 11141585 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||||||| || | ||||| | || |||||| ||| Sbjct 34861837 ATGCAGATTTTCGTCAAGACGTTGACCGGAAAGACTATCACTTTGGAGGTGGAGAGCTCT 34861778 Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | | |||| || | || || || || || || ||||| || || Sbjct 34861777 GACACCATCGACAACGTTAAAGCCAAGATCCAG-GATAAGGAGGGAATCCCACCGGATCA 34861719 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || || ||||| || || || ||||| | | || ||| |||||||| Sbjct 34861718 GCAGAGGCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCAGGACCTTGGCTGATTACAA 34861659 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || || || || ||||| || || || | | ||| | ||||| Sbjct 34861658 TATCCAGAAGGAGTCTACGCTCCACTTGGTCTTGCGTCTACGCGGAGG 34861611 >seq9 Length=54679868 Score = 120 bits (132), Expect = 3e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || || ||||||| |||| || ||| || Sbjct 53991275 ATGCAGATCTTTGTCAAGACTTTGACAGGCAAGACCATCACCCTCGAGGTTGAGAGCTCA 53991334 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || || || ||| ||| ||| ||||| ||||| ||||| || |||| Sbjct 53991335 GACACCATTGA--CAATGTCAAGGCAAAGATCCAGGACAAGGAAGGTATTCCTCCGGACC 53991392 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || |||| ||||| || || || | || |||| ||||| | | || |||| Sbjct 53991393 AGCAGAGGCTTATCTTTGCTGGTAAGCAGCTGGAGGATGGACGCACACTCGCTGACTACA 53991452 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||| || ||||| || || || || | ||||| | |||||||| || Sbjct 53991453 ATATCCAGAAAGAGTCGACTCTCCACCTTGTGCTTCGTCTAAGAGGTGG 53991501 Score = 102 bits (112), Expect = 7e-17 Identities = 154/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||||||||| ||||||||||| || || | || || | ||||| ||| || Sbjct 53991730 AATGCAAATATTTGTGAAGACTTTGACAGGCAAGACTATAACCTTGGAAGTTGAGAGCTC 53991789 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || || || | || || | ||| ||||| |||||||| || || || Sbjct 53991790 AGACACGAT--AGACAATGTCAAGGCTAAGATTCA-GGACAAGGAAGGGATCCCTCCGGA 53991846 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||||| | | || || || || ||||| | || |||| | | ||| ||| ||||| Sbjct 53991847 CCAACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTAGGACTTTGGCTGATTA 53991906 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || || || || || || | ||||| Sbjct 53991907 CAACATCCAGAAGGAGTCGACTCTTCACCTTGTGCT 53991942 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | ||||| ||| | || || | || |||||| ||| Sbjct 53991503 ATGCAGATTTTTGTCAAGACCCTCACCGGCAAAACAATAACTTTGGAGGTGGAGAGCTCT 53991562 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || ||||| | || | ||| ||||| |||||||| ||||| ||||| Sbjct 53991563 GACACGATTGACAATGTGAAGGCGAAGATTCAG-GACAAGGAAGGGATCCCACCAGACCA 53991621 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || || || || ||||| | || |||| ||| || | | |||||||| Sbjct 53991622 GCAGAGACTCATCTTCGCTGGGAAACAGCTCGAGGATGGTCGTACGCTTGCGGATTACAA 53991681 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||| || || || || || || || Sbjct 53991682 TATCCAGAAGGAGTCTACCCTTCA 53991705 >seq5 Length=46902585 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| || || || ||| | |||||| |||| |||||| || Sbjct 33724869 ATGCAGATCTTTGTCAAGACCTTAACGGGAAAAACGATCACACTCGAGGTGGAGAGCTCC 33724928 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | || | ||| || || ||||| || || || || |||||||| Sbjct 33724929 GACACCATCGA-TAACGTCAAGGCCAAGATACAAGACAAGGAGGGAATCCCGCCTGACCA 33724987 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||||||||| || | || |||| ||| || ||| ||||||||| Sbjct 33724988 GCAGCGTTTGATCTTTGCCGGCAAGCAGCTTGAGGATGGTCGTACATTGGCCGATTACAA 33725047 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| || || || || || ||| | ||| || | || | ||||| Sbjct 33725048 CATTCAGAAGGAGTCTACTCTTCATCTCGTGTTACGTCTGCGTGGAGG 33725095 >seq4 Length=53719093 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || ||| | ||||| || |||| || |||| || ||| || Sbjct 7247871 ATGCAAATTTTCGTGAAAACTCTAACCGGCAAGACCATTACTCTCGAGGTCGAGAGCTCC 7247812 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || | ||| || ||| ||||| ||||| ||||| || ||||| Sbjct 7247811 GACACTATTGACAACGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCTCCGGACCAG 7247752 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || ||||| || || | || |||| ||||| | | || |||||| Sbjct 7247751 CAGAGGCTCATCTTCGCCGGTAAGCAGCTTGAGGATGGGCGCACGCTCGCTGACTACAAT 7247692 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| ||||| || ||||| || | ||||| Sbjct 7247691 ATTCAGAAAGAGTCTACGCTCCACCTCGTGCT 7247660 >seq8 Length=41758685 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/192 (71%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || ||||||| || ||||||| |||| || ||||| || Sbjct 28102318 ATGCAGATCTTCGTGAAAACCCTGACCGGGAAGACCATCACCCTCGAGGTCGAGTCCTCC 28102377 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| || || ||| || ||| ||||||||||| || || || || | Sbjct 28102378 GACACCATCGA--CAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCTCCGGATC 28102435 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || || || || ||||| | ||||||| || ||| ||| || |||| Sbjct 28102436 AGCAGCGATTGATCTTCGCTGGAAAACAGCTCGAAGATGGCCGTACTCTGGCTGACTACA 28102495 Query 25177 ATATTCAAAAAG 25188 | || || |||| Sbjct 28102496 ACATCCAGAAAG 28102507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433154322950090