Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq3 544 9e-150 seq5 363 2e-95 seq6538 111 2e-19 >seq3 Length=64984695 Score = 544 bits (602), Expect = 9e-150 Identities = 731/1016 (72%), Gaps = 6/1016 (1%) Strand=Plus/Minus Query 167300 TTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 167359 |||||| | ||||||||||| | | |||||||| || ||||| || |||||||| Sbjct 33666133 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 33666074 Query 167360 TTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 167419 || | || ||||| ||| ||| | || | || || ||| | || || || || ||| Sbjct 33666073 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 33666014 Query 167420 GTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTACCTT---GAGGGTGCTAATTTT 167476 || || |||||||| || || ||||| ||||| | | || ||| |||||| Sbjct 33666013 GTAACTTCATGGTATACTCATGGATTGGC---TAGTTCCTATTTAGAAGGTTGCAATTTT 33665957 Query 167477 CTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGG 167536 | || || ||||| || ||||||||| | | | | |||||| | | |||| ||| Sbjct 33665956 TTAACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGG 33665897 Query 167537 GGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTTT 167596 |||||||| | || || ||||| | | ||||| || | || || || ||||||||| Sbjct 33665896 GGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTT 33665837 Query 167597 GTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATAAGT 167656 || || | |||||| || || || | ||||| |||||| | || |||||||| | | Sbjct 33665836 GTTGCTCACCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCT 33665777 Query 167657 AGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTT 167716 || || | || ||||| ||||| || || || |||||||| |||||||| ||| Sbjct 33665776 CGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTT 33665717 Query 167717 GTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTT 167776 || ||||| ||||| || ||||| || || || || ||||||||||||| || ||| Sbjct 33665716 GTTTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTT 33665657 Query 167777 GGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCTC 167836 ||||| || || |||||| ||||| | || || | || || || ||||| ||||| | Sbjct 33665656 GGTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTG 33665597 Query 167837 AACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAATC 167896 ||||| || |||||||||||||| |||||| | || |||| || || | | || || Sbjct 33665596 AACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATT 33665537 Query 167897 CATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAAA 167956 ||||||| ||| ||||| |||||| | | |||||||||||| ||||| || ||| Sbjct 33665536 CATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGT 33665477 Query 167957 GCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGG 168016 || ||| | | ||||| | || ||||||||||| |||||||| |||||||| || ||| Sbjct 33665476 GCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGG 33665417 Query 168017 TCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTC 168076 || ||||| ||||| ||||||| |||||| |||||||| || ||||||||| | || Sbjct 33665416 TCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 33665357 Query 168077 GTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCTT 168136 || || || | || | |||| ||| || |||| | ||||||| || | || || Sbjct 33665356 GTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTA 33665297 Query 168137 CGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAACT 168196 ||||| |||||||| || || |||||| | | ||||| || ||||| || ||||| ||| Sbjct 33665296 CGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACT 33665237 Query 168197 TTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGAC 168256 |||||||| ||||| || || | || ||||| | || || |||||||| | ||| Sbjct 33665236 TTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGAT 33665177 Query 168257 CAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312 || || ||||||||| || ||||||| || || || | ||| | || |||||||| Sbjct 33665176 CAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 33665121 >seq5 Length=46902585 Score = 363 bits (402), Expect = 2e-95 Identities = 426/576 (74%), Gaps = 0/576 (0%) Strand=Plus/Plus Query 167737 TCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTTGGTGTTGCAGCGATATTTAG 167796 ||| || || || || ||||||||||||| || |||||||| || || |||||| | Sbjct 22000793 TCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCG 22000852 Query 167797 ATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCTCAACCCTTTCCATATGATGGG 167856 |||| | || || | || || || ||||| ||||| | ||||| || ||||||||||| Sbjct 22000853 ATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGG 22000912 Query 167857 AGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAA 167916 ||| |||||| | || |||| || || | | ||| || ||||||| ||| ||||| || Sbjct 22000913 AGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGTGCTATTCATGGTGCTACTGTAGAAAA 22000972 Query 167917 TACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAAAGCATTTGATACGACTCAGGA 167976 |||| | | |||||||||||| ||||| || ||| || ||| | | ||||| | Sbjct 22000973 TACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGC 22001032 Query 167977 AGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTTGGTATTGC 168036 || ||||||||||| |||||||| |||||||| || ||||| ||||| ||||| |||| Sbjct 22001033 CGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGC 22001092 Query 168037 TTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTCGTTCCTGTCATGGGACTTTG 168096 ||| |||||| |||||||| || ||||||||| | || || || || | || | || Sbjct 22001093 TTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATG 22001152 Query 168097 GACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCTTCGTGCTTATGACTTTGTGTC 168156 || ||| || |||| | ||||||| || | || || ||||| |||||||| || || Sbjct 22001153 GATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTC 22001212 Query 168157 TCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAACTTTCTATACGAAAAACATCCT 168216 |||||| | | ||||| || ||||| || ||||| ||||||||||| ||||| || || Sbjct 22001213 CCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCT 22001272 Query 168217 CCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAACCACATGAAAACTTTGT 168276 | || ||||| | || || |||||||| | ||| || || ||||||||| || | Sbjct 22001273 TTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTAT 22001332 Query 168277 ATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312 |||||| || || || | ||| | || |||||||| Sbjct 22001333 ATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 22001368 >seq6538 Length=695 Score = 111 bits (122), Expect = 2e-19 Identities = 212/311 (68%), Gaps = 6/311 (2%) Strand=Plus/Plus Query 167300 TTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 167359 |||||| | ||||||||||| | | |||||||| || ||||| || |||||||| Sbjct 388 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 447 Query 167360 TTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 167419 || | || ||||| ||| || || | || || ||| | || || || || ||| Sbjct 448 CTATTGCTCTTTCCTTGTGCCAATTCCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 507 Query 167420 GTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGT---TACCTTGAGGGTGCTAATTTT 167476 || || |||||||| || || |||| ||||| || | || ||| |||||| Sbjct 508 GTAACTTCATGGTATACTCATGGATTGG---CTAGTTCCTATTTAGAAGGTTGCAATTTT 564 Query 167477 CTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGG 167536 | || || ||||| || ||||||||| | | | | |||| | | | |||| ||| Sbjct 565 TTAACCGCTGCAGTTTCTACTCCTGCTAAAAGTTTAGCGCATTTTTTGTTGTTACTGTGG 624 Query 167537 GGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTTT 167596 |||||||| | || ||||| |||| | ||||| || | || || || ||||||||| Sbjct 625 GGTCCTGAAGCACAAGGGGACTTCACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTT 684 Query 167597 GTGGCGCTCCA 167607 || || || || Sbjct 685 GTTGCTCTTCA 695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566998825105600