Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq9 107 1e-18 seq1 95.1 9e-15 seq5 86.0 4e-12 >seq9 Length=54679868 Score = 107 bits (118), Expect = 1e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||||||| | || || || || ||||| || || ||| ||||| || | | Sbjct 53991730 AATGCAAATATTTGTGAAGACTTTGACAGGCAAGACTATAACCTTGGAAGTTGAGAGCTC 53991789 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| ||| | | | || | ||| || ||| || || || || | ||| |||| Sbjct 53991790 AGACACGATAGACAATGTCAAGGCTAAGATTCAGGACAAGGAAGGGATCCCTCCGGACCA 53991849 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||||||| ||||| ||||| ||||| || || ||| | ||| |||| |||||||| Sbjct 53991850 ACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTAGGACTTTGGCTGATTACAA 53991909 Query 22013 TATTCAGAAGGAATCTACTCTTCA 22036 || |||||||| || |||||||| Sbjct 53991910 CATCCAGAAGGAGTCGACTCTTCA 53991933 >seq1 Length=43764888 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||||||||| |||| || || ||||| || || || || |||| ||| | | Sbjct 35466783 ATGCAAATATTCGTTAAGACGTTGACGGGAAAGACGATCACTTTGGAGGTTGAAAGCTCC 35466842 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | || || || || ||||||||| | || | |||| Sbjct 35466843 GACACTATTGACAATGTCAAAGCCAAGATCCAAGACAAAGAGGGTATCCCACCAGACCAG 35466902 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | ||||||||||| || || || || ||| || |||| |||||||| Sbjct 35466903 CAGAGGTTGATCTTTGCTGGAAAGCAGCTCGAGGATGGTCGCACCTTGGCAGATTACAAC 35466962 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || |||||||||||||||||||| |||| | ||| |||| ||||| Sbjct 35466963 ATCCAGAAGGAATCTACTCTTCACTTGGTCCTGCGTCTACGTGGAGG 35467009 Score = 93.3 bits (102), Expect = 3e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || || |||||| | ||| |||| ||||| |||||||||||||| || ||| | ||| Sbjct 35467104 GACAAGGAGGGTATTCCTCCCGACCAGCAGAGGCTTATCTTTGCTGGAAAGCAATTGGAA 35467163 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||| | || ||||||||||||| ||||||||||| ||||| ||||| |||| Sbjct 35467164 GATGGCAGGACCTTGGCCGATTACAACATTCAGAAGGAGTCTACGCTTCACTTGGT 35467219 >seq5 Length=46902585 Score = 86.0 bits (94), Expect = 4e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||| ||| | | |||||||| ||||| || || || ||| || ||||||||| Sbjct 33724984 ACCAGCAGCGTTTGATCTTTGCCGGCAAGCAGCTTGAGGATGGTCGTACATTGGCCGATT 33725043 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||| ||||||||||| |||||||||||| | || |||||| | || ||||| Sbjct 33725044 ACAACATTCAGAAGGAGTCTACTCTTCATCTCGTGTTACGTCTGCGTGGAGG 33725095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357981264251644