Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq7 248 2e-60 seq2 248 2e-60 seq3 107 4e-18 >seq7 Length=48366697 Score = 248 bits (274), Expect = 2e-60 Identities = 500/736 (68%), Gaps = 22/736 (3%) Strand=Plus/Minus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| | ||| | | |||||| |||||||||||||| | ||| ||||||||| Sbjct 33024504 GATCCAATACCCGCAGATCTGGGAGATGTACAAGAAGGCCGAAGCCTCTTTCTGGACCGC 33024445 Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAG----TCACTGTCTGAGAACG 42399 ||| || | ||||| || | |||| || ||||||| ||| | | |||| || Sbjct 33024444 CGAAGAAGTCGACCTCTCCCAAGACAATCGCGACTGGGAGAATCTCAACGACGGAGAGCG 33024385 Query 42400 AAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATG 42459 | | ||| ||||| || | || ||||||||||||||||| ||||| || || | Sbjct 33024384 ACAC----TTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCAGACGGAATCGTTTTGG 33024329 Query 42460 AGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACG 42519 |||| || ||| | |||||||| || ||||| || |||||||| |||||||| Sbjct 33024328 AGAATCTCGCCTCGCGGTTCATGTCCGACGTGCAAGTCTCCGAGGCGCGTGCCTTCTACG 33024269 Query 42520 GCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGT 42579 | |||||||| || || ||||| | ||||| ||| ||||| | |||||| |||||| Sbjct 33024268 GGTTCCAGATCGCGATTGAGAATATCCACTCAGAGATGTACAGCCTCCTGCTCGACACGT 33024209 Query 42580 ACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCA 42639 ||||| ||| | ||| | || || ||| || || || || || || ||| Sbjct 33024208 ACATCAAGGACAACAAGGAGAGGGACCACCTTTTCCGCGCGATTGAAACCATCCCTTGCG 33024149 Query 42640 TCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCG 42699 || ||||||||| | ||||| | | |||||||| | | | || |||| || Sbjct 33024148 TCGCGAAGAAGGCCCAATGGGCCATGACGTGGATCGATGGATCTCA---GACTTTCGCCG 33024092 Query 42700 AGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCA 42759 ||||| | || ||||| | |||||| || ||||||||||| || |||| ||| | Sbjct 33024091 AGAGGATCGTCGCCTTCGCTTGCGTCGAAGGGATCTTCTTCTCCGGTAGCTTCTGCTCGA 33024032 Query 42760 TCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATC 42818 |||||||||| ||| || ||| || ||||| || | |||||||| ||||| | ||| Sbjct 33024031 TCTTCTGGCTTAAGAAGCGAGGGCTC-ATGCCTGGGTTAACCTTCTCCAACGAGTTGATC 33023973 Query 42819 AGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGG 42878 | | ||||| || |||| | || || ||||| |||| ||| | || ||| ||| Sbjct 33023972 TCCCGAGACGAAGGCTTGCACTGCGATTTCGCCTG---CCTGATCTATACCCTCCTGAGG 33023916 Query 42879 CACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAG 42938 |||| | || ||||||| || | | ||| || || || || |||||||||| | Sbjct 33023915 ACGAAGCTCACGGAGGAGCGCGTGAAGTCGATCGTCTGCGACGCGGTCGAGATCGAGAGG 33023856 Query 42939 GAGTTCCTCACGCAGTCGCTGCC---CGTGTCCCTGGTCGGCATGAACCACGACCTCATG 42995 ||||| | | |||| || || || |||| || ||||||| ||||| ||| Sbjct 33023855 GAGTTTGTGTGCGACGCGCTTCCTTGCGCGT---TGGTGGGGATGAACCGTGACCTGATG 33023799 Query 42996 TGCAAGTACATCCAGT 43011 | |||| ||| ||| Sbjct 33023798 AGTCAGTATATCGAGT 33023783 >seq2 Length=52886895 Score = 248 bits (274), Expect = 2e-60 Identities = 503/739 (68%), Gaps = 21/739 (3%) Strand=Plus/Minus Query 42292 ACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGA 42351 ||| | | |||||| ||||||||||| || | |||| |||||||||||| || Sbjct 45187536 ACCCGCAGATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAAGAAG 45187477 Query 42352 TTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCT-GAGAACGAAAAGTTT--- 42407 | ||||| || | ||||| || ||||||| || ||| || ||| | || Sbjct 45187476 TCGACCTCTCCCAAGACACACGCGACTGGGAGA-ACAATCTCGACGACGGAGAGCGCCAC 45187418 Query 42408 TTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTG 42467 ||| ||||| || | || ||||||||||||||||| ||||| || || ||||| || Sbjct 45187417 TTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGGATCGTTCTCGAGAATCTC 45187358 Query 42468 GCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAG 42527 |||||| |||||||| || |||||| || ||||||||| ||||||||| |||||| Sbjct 45187357 GCCACCCGGTTCATGTCCGACGTGCAGGTCTCCGAGGCGCGCGCCTTCTACGGGTTCCAG 45187298 Query 42528 ATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTG 42587 || || || ||||| | ||||| ||| ||||| || | | ||||||||| | Sbjct 45187297 ATCGCGATCGAGAATATCCACTCGGAGATGTACAGTCTCTTGTTAGATACGTACATCAAG 45187238 Query 42588 GATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAG 42647 || | ||| | || || ||| || || ||||| || || ||| || |||| Sbjct 45187237 GACAACAAGGAGAGGGACCATCTCTTCCGCGCGATTGAGACCATCCCTTGCGTCGCGAAG 45187178 Query 42648 AAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCA-ACGTTCGGCGAGAGGC 42705 ||||| | ||||| | || |||||||| | || | || || |||| ||||||| Sbjct 45187177 AAGGCCCAATGGGCCATGAAGTGGATCGA-----CGGATCTCAGACTTTCGCCGAGAGGA 45187123 Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 | || || || | |||||| || ||||||||||| || |||| ||| ||||||| Sbjct 45187122 TCGTGGCGTTCGCTTGCGTCGAAGGGATCTTCTTCTCCGGTAGCTTCTGCTCGATCTTCT 45187063 Query 42766 GGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGG 42825 |||||||| || | | ||||| || ||||||||||| ||||| || ||| | | Sbjct 45187062 GGCTCAAGAAGCGTGGGCTCATGCCGGGGCTCACCTTCTCCAACGAGCTGATCTCGCGAG 45187003 Query 42826 ACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGC 42885 |||| || || || | ||||| || || |||| ||| | || | | ||| |||| Sbjct 45187002 ACGAAGGCCTTCACTGCGACTTCGCGTG---CCTGATCTATACCCTCTTGAGGACGAAGC 45186946 Query 42886 CCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCC 42945 ||| | ||||| || | | ||| | || || ||||||||||||| |||||| Sbjct 45186945 TATCGGAAGAGCGCGTGAAGTCGATCGTGTGCGACGCGGTGGAGATCGAGAGGGAGTTTG 45186886 Query 42946 TCACGCAGTCGCTGCC---CGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGT 43002 || | |||| || || || |||| || ||||||| ||| | ||| | ||| Sbjct 45186885 TCTGCGACGCGCTTCCTTGCGCGT---TGGTGGGGATGAACCGGGACTTGATGAGTCAGT 45186829 Query 43003 ACATCCAGTACGTCGCCGA 43021 | || ||| ||| || || Sbjct 45186828 ATATTGAGTTCGTGGCGGA 45186810 >seq3 Length=64984695 Score = 107 bits (118), Expect = 4e-18 Identities = 253/372 (68%), Gaps = 15/372 (4%) Strand=Plus/Plus Query 42645 AAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCA-ACGTTCGGCGAGA 42702 ||||| || | |||||| | | |||||||| | || | || || |||| |||| Sbjct 52385830 AAGAAAGCTCAGTGGGCGATGACGTGGATCGA-----CGGATCTCAGACCTTCGCGGAGA 52385884 Query 42703 GGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCT 42762 || || |||||| || || ||| || ||||||||||| || |||| ||| |||| Sbjct 52385885 GGAGTGTCGCCTTTGCCTGCGCCGAAGGGATCTTCTTCTCCGGTAGCTTCTGCTCGATCT 52385944 Query 42763 TCTGGCTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGC 42821 ||||||||||| | ||| || ||||| || | |||||||| ||||| | ||| Sbjct 52385945 TCTGGCTCAAGAAACGAGGGCTC-ATGCCTGGTTTGACCTTCTCCAACGAGTTGATCTCT 52386003 Query 42822 AGGGACGA-GGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCA 42880 | ||||| || |||| | || || ||||| |||| ||| | || ||| ||| Sbjct 52386004 CGAGACGACGGCTTTGCACTGCGATTTCGCCTG---CCTGATCTACACCCTCCTGAGGAC 52386060 Query 42881 CAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGA 42940 || | | | ||||||| || | | ||| || ||| ||||| |||||||||| ||| Sbjct 52386061 GAATCTCAAGGAGGAGCGCGTGAAGTCGATCGTCTGGGACGCCGTCGAGATCGAGAGGGA 52386120 Query 42941 GTTCCTCACGCAGTCGCTGCCCGTG-TCCCTGGTCGGCATGAACCACGACCTCATGTGCA 42999 ||| | | |||| || ||| | ||||| || ||||||| ||||| ||| | Sbjct 52386121 GTTTGTGTGCTACACGCT-CCTGTGCGCGCTGGTGGGGATGAACCGTGACCTGATGAGTC 52386179 Query 43000 AGTACATCCAGT 43011 |||| ||| ||| Sbjct 52386180 AGTATATCGAGT 52386191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943951005763360