Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq7 102 7e-17 seq3 102 7e-17 >seq7 Length=48366697 Score = 102 bits (112), Expect = 7e-17 Identities = 169/240 (70%), Gaps = 8/240 (3%) Strand=Plus/Plus Query 20281 GGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGA 20340 |||||||||||| || || || | |||||| ||| | |||| |||||||| ||||| || Sbjct 46712423 GGCAATGTTAAACGGTACACCAAGACCCATATCTGCTGACCGCTGATACATTTGACACGA 46712482 Query 20341 AAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAA 20400 |||||| |||| || ||| |||| || |||| ||| || || ||||| ||||||| Sbjct 46712483 AAGCTCTCCGTTTGCAACAAAAAACTGTGCAAACATGTGGCAAGGAGGAAGTGCCATCAG 46712542 Query 20401 CGACAAGTCCGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTT 20460 | | ||| | || ||||| || |||| || || | | ||| | ||||| || || Sbjct 46712543 CTTAAGGTCAGAAGGATTCCAAGCTGACATTATAATCCGGCGATCATCAGGATTGTTCTT 46712602 Query 20461 TAT----TAAATCCACAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516 || | ||| || || || | | || ||||| || ||||| || || ||||||| Sbjct 46712603 GATCTTGTTAAT-TAC-ATCTA--AGAGCTGATCAAATCCTTGGCCAGTGTAATCAGCAT 46712658 >seq3 Length=64984695 Score = 102 bits (112), Expect = 7e-17 Identities = 185/271 (68%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 20246 ACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAA 20305 || ||||| ||||| |||| | || || ||| || |||||||| || || || | Sbjct 32924627 ACGTGAGCGAGCATGCAAGTAAGAAGAGAGTAGGAAGCGATGTTAAACGGCACACCAAGG 32924686 Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365 ||||| || |||| | |||||||| ||| || || ||||| || || || ||||| || Sbjct 32924687 CCCATATCCGCCGAACGCTGATACATCTGGCACGAGAGCTCCCCTTCCGCCACATAGAAC 32924746 Query 20366 TGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCA 20425 || |||| ||| || || ||||||||||||| | | || | |||||||| ||| Sbjct 32924747 TGCGCAAACATGTGGCACGGAGGAAGCGCCATCAGCTTGAGATCAGAAGGGTTCCAAGCA 32924806 Query 20426 CACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAAT 20485 | | ||||| | | ||| | ||||| || || || || | | || | | Sbjct 32924807 GATAATATGATACGCCGATCATCAGGATTGTTCTTCATCTTGTCGATTACGTCTGCGAGC 32924866 Query 20486 TGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516 || ||||| || ||||| || || ||||||| Sbjct 32924867 TGATCAAAGCCTTGGCCAGTGTAATCAGCAT 32924897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441191362676240