Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq7 131 4e-25 seq2 111 3e-19 seq8 95.1 3e-14 >seq7 Length=48366697 Score = 131 bits (144), Expect = 4e-25 Identities = 570/884 (64%), Gaps = 31/884 (4%) Strand=Plus/Minus Query 242869 TCTGCAT--TCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAA 242926 ||||||| |||| ||||| || ||| | || ||||| ||||| |||||||| | || Sbjct 33024517 TCTGCATGTTCCCGATCCAATACCCGCAGATCTGGGAGATGTACAAGAAGGCCGAAGCCT 33024458 Query 242927 CCTTTTGGACCACCGAGGAAGTT--CCTCTGAACGCAGACG-TCGTCGACTGGCGCGAGA 242983 | || |||||| |||| ||||| ||||| | |||| ||| ||||||| |||| Sbjct 33024457 CTTTCTGGACCGCCGAAGAAGTCGACCTCTC--CCAAGACAATCG-CGACTGG---GAGA 33024404 Query 242984 AACTCAATGACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCG 243043 | ||||| |||| || || || |||||||||||| | || | || ||||| | ||| | Sbjct 33024403 ATCTCAACGACGGAGAGCGACACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCAG 33024344 Query 243044 ATGGTATTGTGATGGAAAATCTGCAGACCAACTTTAGTGT-GGAAGTAACGGTTCCAGAG 243102 | || || || |||| ||||| | | || ||| || || || | ||| Sbjct 33024343 ACGGAATCGTTTTGGAGAATCT-CGCCTCGCGGTTCATGTCCGACGTGCAAGTCTCCGAG 33024285 Query 243103 GCACGGCAATTTTATGCTTACCAAA----CATTCAACGAATCTATCCATTCTGAACAATA 243158 || || || || | | ||| | ||| | ||| |||||| || || || Sbjct 33024284 GCGCGTGCCTTCTACGGGTTCCAGATCGCGATTGA--GAA--TATCCACTCAGAGATGTA 33024229 Query 243159 TGCTCTTCTTATCGACGCGCTTATTTC-AGATGAACAA-GAGCGAAACGAGCTTTTCGAC 243216 || || ||||| || || || || ||||| ||| | || | |||||| | Sbjct 33024228 CAGCCTCCTGCTCGACACG--TACATCAAGGACAACAAGGAGAGGGACCACCTTTTCCGC 33024171 Query 243217 GCCATCGAAAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAA 243276 || || |||| ||| || || || ||||| ||||||| || |||| | || Sbjct 33024170 GCGATTGAAACCATCCCTTGCGTCGCGAAGAAGGCCCAATGGGCCATGACGTGGATCGAT 33024111 Query 243277 CCCGGTAAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTT 243336 | | | || || ||| | ||||||||| | ||||| ||||| || | || Sbjct 33024110 GGATCTCAGACTTTCGCCGAGAGGATCGTCGCCTTCGCTTGCGTCGAAGGGATCTTCTTC 33024051 Query 243337 TCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGT 243396 ||||| || |||||| | ||||| ||||| ||| ||| | |||||||| | Sbjct 33024050 TCCGGTAGCTTCTGCTCGATCTTCTGGCTTAAGAAGCGAGGGCTCATGCCTGGGTTAACC 33023991 Query 243397 CTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATG 243456 | || |||||||| ||| || ||||| ||| | ||| | |||| || || Sbjct 33023990 TTCTCCAACGAGTTGATCTCCCGAGACGAAGGCTTGCACTGCGATTTCGCCTGCCTGATC 33023931 Query 243457 TATTCAAAGCTCC--AGAAC-AAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAA 243513 ||| | |||| || || ||||| | || || || ||| || || Sbjct 33023930 TAT---ACCCTCCTGAGGACGAAGCTCACGGAGGAGCGCGTGAAGTCGATCGTCTGCGAC 33023874 Query 243514 GCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATG 243573 || || || | ||| | ||| || | |||||||| |||| ||| | | | || ||| Sbjct 33023873 GCGGTCGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTTCCTTGCGCGTTGGTGGGGATG 33023814 Query 243574 AACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTT 243633 ||| ||| || ||| | ||||| ||||| || || || || | | || |||||| Sbjct 33023813 AACCGTGACCTGATGAGTCAGTATATCGAGTTTGTGGCGGATAGGCTGTTGGGTGCGCTT 33023754 Query 243634 GGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTT 243693 || || | ||| |||||| ||| || |||| | |||||| | || |||||| Sbjct 33023753 GGGTACGGGAAGGTGTACGGTGTGGCGAATCCGTTTGATTGGATGGAGTTGATCTCGCTT 33023694 Query 243694 CAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 || |||||||| ||||||||||| ||| | || ||||||| || Sbjct 33023693 CAGGGGAAAACGAACTTCTTCGAGAAGAGAGTTGGTGATTACCA 33023650 >seq2 Length=52886895 Score = 111 bits (122), Expect = 3e-19 Identities = 571/892 (64%), Gaps = 44/892 (5%) Strand=Plus/Minus Query 242869 TCTGCAT--TCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAA 242926 ||||||| |||| ||||| || ||| | || ||||| ||||| ||||| || | || Sbjct 45187557 TCTGCATGTTCCCAATCCACTACCCGCAGATCTGGGAGATGTACAAGAAAGCCGAAGCCT 45187498 Query 242927 CCTTTTGGACCACCGAGGAAGTT--CCTCTG--AACGCAGACGTCGTCGACTGGCGCGAG 242982 |||| |||||| |||| ||||| ||||| || || ||| ||||||| | Sbjct 45187497 CCTTCTGGACCGCCGAAGAAGTCGACCTCTCCCAAGACACACG----CGACTGGGAGAAC 45187442 Query 242983 AAACTCAATGACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCC 243042 || ||| | |||| || || || |||||||||||| | || | || ||||| | |||| Sbjct 45187441 AATCTCGACGACGGAGAGCGCCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCC 45187382 Query 243043 GATGGTATTGTGATGGAAAATCTGCAGACCAACTTTAGTGT-GGAAGTAACGGTTCCAGA 243101 || || || || | || ||||| ||| || | ||| || || ||| | || Sbjct 45187381 GACGGGATCGTTCTCGAGAATCTCGCCACCCGGTTCA-TGTCCGACGTGCAGGTCTCCGA 45187323 Query 243102 GGCACGGCAATTTTATGCTTACCAAACATTCAACGAATCTATCCATTC-----TGAACAA 243156 ||| || || || | | ||| | | ||| |||||| || || ||| Sbjct 45187322 GGCGCGCGCCTTCTACGGGTTCCAGATCGCGATCGAGAATATCCACTCGGAGATGTACAG 45187263 Query 243157 TATGCTCTTCTTATCGACGCGCTTATTTC-AGATGAACAA-GAGCGAAACGAGCTTTTCG 243214 | ||||| ||| ||| || || || ||||| ||| | || | || ||| Sbjct 45187262 T---CTCTTGTTAGATACG----TACATCAAGGACAACAAGGAGAGGGACCATCTCTTCC 45187210 Query 243215 ACGCCATCGAAAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAG 243274 ||| || || | ||| || || || ||||| ||||||| ||||||| | | Sbjct 45187209 GCGCGATTGAGACCATCCCTTGCGTCGCGAAGAAGGCCCAATGGGCCATGAAGTGGATCG 45187150 Query 243275 AACCCGG---TAAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTC 243331 | ||| | | | || || ||| | |||| || | | ||||| ||||| || Sbjct 45187149 A---CGGATCTCAGACTTTCGCCGAGAGGATCGTGGCGTTCGCTTGCGTCGAAGGGATCT 45187093 Query 243332 TGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCC 243391 | || ||||| || |||||| | ||||| ||||| ||| || | ||||| || | Sbjct 45187092 TCTTCTCCGGTAGCTTCTGCTCGATCTTCTGGCTCAAGAAGCGTGGGCTCATGCCGGGGC 45187033 Query 243392 TCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAG 243450 || | || |||||| | ||| || ||||| ||||||||| | |||| ||| Sbjct 45187032 TCACCTTCTCCAACGAGCTGATCTCGCGAGACGAAGGCCTTCACTGCGACTTCGCGTG-C 45186974 Query 243451 CTTATGTATTCAAAGCTCCAGAAC-AAGCTACCATTCGAAA---CG-GTCAAACAAATCA 243505 || || ||| | || || || |||||| ||| || || || || ||| Sbjct 45186973 CTGATCTATAC-CCTCTTGAGGACGAAGCTA----TCGGAAGAGCGCGTGAAGTCGATCG 45186919 Query 243506 TCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTA 243565 | || || || || | ||| | ||| || | |||||||| |||| ||| | | Sbjct 45186918 TGTGCGACGCGGTGGAGATCGAGAGGGAGTTTGTCTGCGACGCGCTTCCTTGCGCGTTGG 45186859 Query 243566 TTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCA 243625 | || |||||| || | ||| | ||||| || || ||||| || || | | || Sbjct 45186858 TGGGGATGAACCGGGACTTGATGAGTCAGTATATTGAGTTCGTGGCGGATAGGTTGTTGG 45186799 Query 243626 TCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCA 243685 |||||||| || | ||| |||||| ||| || |||| | |||||| | | Sbjct 45186798 GTGCGCTTGGGTACGGGAAGGTGTACGGTGTGGCGAATCCGTTTGATTGGATGGAGTTGA 45186739 Query 243686 TTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 | |||||||| |||||||| || |||||||| ||| | || ||||||| || Sbjct 45186738 TCTCGCTTCAGGGGAAAACGAATTTCTTCGAGAAGAGGGTTGGTGATTACCA 45186687 >seq8 Length=41758685 Score = 95.1 bits (104), Expect = 3e-14 Identities = 368/577 (64%), Gaps = 1/577 (0%) Strand=Plus/Plus Query 149088 TTCGCTTCGCAGAATTTTCTGATCAGAACCGGGAACACGTGACCGTTATTAAGATCGTAT 149147 || ||||| ||| | || |||||| | || | ||| ||| ||| | | | | | | Sbjct 21884391 TTAGCTTCATGGAACCTCCTCATCAGAGCAGGAAGCACATGAGAGTTCTCAGGGTGGAAA 21884450 Query 149148 CGGTCATTTGGACCGCTGAGATTCGTCGGCATGACTGAGACGAAATTACATCCATATTGT 149207 || || |||||| |||||||||||||||| | |||| || || || || Sbjct 21884451 TTATCGTTCGGACCGTAGAGATTCGTCGGCATGCCGGAGATCGCATCCCACTGATGCTGG 21884510 Query 149208 TTTCTGTAAGCATCACACATCTCGATTCCGGCGATTTTCGCTATCGCGTATGGTTTGTTA 149267 | ||||| || | |||||||| ||| || ||||| ||||| |||||||| | ||| Sbjct 21884511 ATCCTGTACGCTTGACACATCTTGATCCCCGCGATCTTCGCGATCGCGTACCACTCGTTG 21884570 Query 149268 GTGGGTTCGAGAAATCCTGTCATCAGATATTCTTCCTTGATAGGATTTTGAGCTTCTTTT 149327 || || ||||| || || | ||| | ||| || || | |||| || Sbjct 21884571 GTCGGCTCGAGGGTGCCGGTGAGGAGAGCTGATTCAGGTATCGGCTGAGGAGCGAACTTG 21884630 Query 149328 GGGTAAATGCAACTGCTACCGAGAAACACGAGTTTTTTCACTCCGAACATTTTGGACGCA 149387 ||||| |||||| | ||||| || | ||| || ||||| ||| | | | | | Sbjct 21884631 GGGTAGATGCAAGAGGAGCCGAGGAAGAGGAGCTTCTTCACACCGTGCGTGTAAGCGGAG 21884690 Query 149388 TGAATGACATTCGTCTGAATCATCAGATTATCGTGAATAAAATCGCCCCCGAAGGAGTTG 149447 || || || || ||||| || ||||| || || || || | | | | |||| Sbjct 21884691 TGGATCACGTTGGTCTGGATTTGGAGATTGACGGCGATGAAGTCAGCTGGGTATGTGTTG 21884750 Query 149448 TTCGCGTGAATACCTCCTACTTTTGCAGCCGCGAGAAATACGTATTCTGGTAGTTCGATC 149507 || ||||| || || || ||||| || || ||||| | ||||| | ||| || | Sbjct 21884751 TTGGCGTGGATCCCACCGACTTTGGCTGCGGCGAGGATGACGTAAGCGGGTTTCTCTGTG 21884810 Query 149508 TCGAAAAACGCGTTCACTTCTCGTTGGTTTGTCAGGTCGAGATCTTTTGACGTTCGAGTG 149567 |||| || | | ||| || |||||| || ||||| || || |||||| | Sbjct 21884811 GCGAAGAATGATTCCACGTCGGATTGGTTAGTGAGGTCAAGCTCGGAGTGGGTTCGAAGG 21884870 Query 149568 ACGATGTTCATATATCCTTCTTTTTGCAAGAGTCTCATAAGAGCGCTTCCGACCATTCCT 149627 | || ||| | | || | || | | | || | || ||| |||||||| |||| Sbjct 21884871 AGGAGGTTTGTGAAACCATATTCTCGGAGTTTTCGGACAATGGCGGATCCGACCAATCCT 21884930 Query 149628 GTGTGACCTGCCACATATATCTTCG-AGTGTTTTTCC 149663 |||| || || ||| | ||||||| || ||||||| Sbjct 21884931 CTGTGTCCCGCGACAAAAATCTTCGCGGTTTTTTTCC 21884967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102415299444100