Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq2 131 2e-25 seq7 98.7 1e-15 seq8 91.5 2e-13 >seq2 Length=52886895 Score = 131 bits (144), Expect = 2e-25 Identities = 193/271 (71%), Gaps = 7/271 (3%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| || || ||||| || ||||| || || || |||||| || || |||||||| || Sbjct 45186989 GTGAAGGCCTTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCC 45187048 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||| | |||||| |||| || || ||| ||||||||||| || || || || Sbjct 45187049 ACGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATCCCTTCGACGCA 45187108 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 |||||||| | || | ||| || || | | || | ||| | ||||||||| || Sbjct 45187109 AGCGAACGCCACGATCCTCTCGGCGAAAGTCTGAGA---TCCGTCGATCCACTTCATGGC 45187165 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 126297 ||| || ||||| ||| ||| || |||| ||||| ||||| ||||| | | | | Sbjct 45187166 CCATTGGGCCTTCTTCGCGACGCAAGGGATGGTCTCAATCGCGCGGAAGAGATGGTCCCT 45187225 Query 126298 TTC--TGATGGATCTTTGATGTACTTATCTA 126326 || || || || ||||||||| |||||| Sbjct 45187226 CTCCTTGTTG--TCCTTGATGTACGTATCTA 45187254 >seq7 Length=48366697 Score = 98.7 bits (108), Expect = 1e-15 Identities = 151/215 (70%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 || ||||| |||||||| | || || |||||| | || |||||||| || |||||| Sbjct 33023959 CCTTCGTCTCGGGAGATCAACTCGTTGGAGAAGGTTAACCCAGGCATGAGCCCTCGCTTC 33024018 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 || | |||||| |||| || || ||| ||||||||||| || || || || ||||| Sbjct 33024019 TTAAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATCCCTTCGACGCAAGCGAAG 33024078 Query 126185 GCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCCCACTGC 126244 || | || | ||| || || | | || | || | |||| |||| ||||| || Sbjct 33024079 GCGACGATCCTCTCGGCGAAAGTCTGAGA---TCCATCGATCCACGTCATGGCCCATTGG 33024135 Query 126245 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 ||||| ||| ||| || |||| ||| | ||||| Sbjct 33024136 GCCTTCTTCGCGACGCAAGGGATGGTTTCAATCGC 33024170 >seq8 Length=41758685 Score = 91.5 bits (100), Expect = 2e-13 Identities = 269/405 (66%), Gaps = 16/405 (4%) Strand=Plus/Plus Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846 || ||||| || ||||| | || | |||| |||||| |||||| | || || || Sbjct 1370812 CGGTCAAAACGCCCTGGTCTCAGCAAGGCGGAGTCAAGAATATCAGCTCTATTAGTTGCA 1370871 Query 10847 GCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGA 10903 || | |||| || || || |||| ||||| |||||||||||||||||||| || Sbjct 1370872 GCAACAACAATGACACCAGT---GTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGG 1370928 Query 10904 TTGATGGTTTGTTCGCGTTCATCATT--CGCGGGC-ATACCACCCGCACTGCGTTGCTTA 10960 || | ||| || || | ||||||||| | | | || ||| | | || ||| || Sbjct 1370929 TTCAAGGTCTGCTCTCTTTCATCATTACCTCCACCAATCCCAGTCCCTCT---CTGCCTA 1370985 Query 10961 CCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATT-TTCACGGGCAACTTC 11019 || || || ||||| || || | || || || ||||| ||| | | | | ||| Sbjct 1370986 CCAACAGCATCAATCTCGTCCACAAAGACAATGCACGGCGCATTCTCCTTAGCCTTCTTG 1371045 Query 11020 AAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGC 11079 ||| | ||| || || ||| ||||| ||||| |||||||| || || || | | | Sbjct 1371046 AAA-AGATCACGCACCCTCGAAGCACCAACACCGACAAACATCTCAACGAACTCAGACCC 1371104 Query 11080 GGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 11138 | | || | | ||| || || || |||||| || |||||| ||| | |||||| | Sbjct 1371105 CG-AGATGGAAAAGAAAGGCACACCGGCTTCACCAGCAATGGCTTTGGCCAAGAGGGTTT 1371163 Query 11139 TCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCC 11183 | || || || || || |||| ||| |||| ||||||| Sbjct 1371164 TACCAGTACCGGGAGGACCAACGAGGAGGACACCTTTAGGGATCC 1371208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597108042868880