Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq9 123 3e-23 seq5 114 1e-20 seq1 114 1e-20 seq7 113 5e-20 seq4 111 2e-19 seq8 109 6e-19 seq3 109 6e-19 seq6 107 2e-18 >seq9 Length=54679868 Score = 123 bits (136), Expect = 3e-23 Identities = 164/221 (74%), Gaps = 10/221 (5%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||||||||||||| | || ||| || ||||| ||||| ||||||| || || | Sbjct 23042217 ACGCAACACCAAATGAAGAGTCGACTCTTTCTGAATGTTGTAGTCAGCCAAGGTACGACC 23042276 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| |||||||| ||||| ||||||||||| | ||| | | |||||| Sbjct 23042277 ATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGGATTCCCTCCTT 23042336 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACC 42167 |||| ||| | || | |||| ||| | | | ||||| |||| || || |||| Sbjct 23042337 GTCC-TGAATCTTAGCCTTGA-CGTTGTCAATGGTGTCGGAGCTC---TCAACTTCGAGG 23042391 Query 42168 GTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || || || || || ||||| |||||||| ||||| Sbjct 23042392 GTGATCGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 23042432 Score = 102 bits (112), Expect = 9e-17 Identities = 157/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||||||||| || | || ||| || ||||| ||||| ||||||| || || | Sbjct 23042445 ACGCAACACCAAGTGAAGGGTCGACTCTTTCTGAATGTTGTAGTCAGCCAAGGTACGACC 23042504 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| || ||||| || | ||||||||||||| || | | |||||| Sbjct 23042505 ATCCTCGAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCGGGAGGAATACCCTCCTT 23042564 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCG 42168 ||| ||| || ||| | ||| | | | ||||| |||| ||||| |||| | Sbjct 23042565 GTCTTGGATCTTAGCTTTCA-CGTTGTCGATGGTGTCGGAGCTC---TCCACCTCGAGTG 23042620 Query 42169 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || || || || || ||||| || ||||| ||||| Sbjct 23042621 TGATAGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 23042660 Score = 102 bits (112), Expect = 9e-17 Identities = 164/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| || | | |||| ||| | || |||||| || || ||||| ||||| Sbjct 53991274 ACCACCTCTCAACCTGAGAACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCAGC 53991215 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||||| | || || ||||||||||| ||||| ||||| | ||||||||| | || Sbjct 53991214 GAGAGTCCTTCCATCTTCAAGCTGCTTACCGGCGAAGATGAGCCTCTGCTGGTCCGGAGG 53991155 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATT 42156 | || ||||||||| ||| || |||| ||| | | | ||||| |||| | Sbjct 53991154 AATGCCTTCCTTGTCCTGGATCTTAGCCTTGA-CGTTGTCAATGGTGTCAGAGCTC---T 53991099 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || |||| || ||||| ||||| || || || || || || |||||||| Sbjct 53991098 CGACCTCGAGAGTAATGGTCTTGCCGGTGAGAGTTTTCACGAAAATTTGCAT 53991047 Score = 102 bits (112), Expect = 9e-17 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||||| ||| | ||| | || | || ||| || || |||||||| ||||| Sbjct 53991502 ACCACCTCTTAGACGAAGCACAAGGTGGAGAGTCGACTCTTTCTGGATATTGTAGTCAGC 53991443 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || |||||||||||||| || || || | ||||||||| | || Sbjct 53991442 GAGTGTGCGTCCATCCTCCAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCCGGAGG 53991383 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTC 42157 | | ||||||||| ||| ||| |||| | | | ||||| |||| || Sbjct 53991382 AATACCTTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATGGTGTCTGAGCTC---TC 53991326 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||| |||||||| ||||| || | ||||| |||||||| ||||| Sbjct 53991325 AACCTCGAGGGTGATGGTCTTGCCTGTCAAAGTCTTGACAAAGATCTGCAT 53991275 Score = 102 bits (112), Expect = 9e-17 Identities = 157/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||||||| | || | || |||||| || ||||||||||| || || || || | Sbjct 53991718 ACGCAACACAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAATCCGCAAGCGTACGACC 53991659 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || ||||| || |||||||| ||||||| ||||||||| | ||| | | ||||| Sbjct 53991658 ATCCTCGAGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTT 53991599 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCG 42168 |||| ||| | || | || | | | | |||||| |||| ||||| || | | Sbjct 53991598 GTCC-TGAATCTTCGCCTTCACATTGTCAATCGTGTCAGAGCTC---TCCACCTCCAAAG 53991543 Query 42169 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || |||||||| || || ||||| ||||| || ||||| Sbjct 53991542 TTATTGTTTTGCCGGTGAGGGTCTTGACAAAAATCTGCAT 53991503 Score = 96.9 bits (106), Expect = 4e-15 Identities = 142/197 (72%), Gaps = 8/197 (4%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||||||||||| ||||| | || || ||||| ||||||||||| Sbjct 53991922 CTCCTTCTGGATGTTGTAATCAGCCAAAGTCCTACCATCCTCAAGCTGTTTACCAGCGAA 53991863 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||||||| ||| ||||| | || | | ||||||||| ||| | || | |||| Sbjct 53991862 GATGAGTCTCTGTTGGTCCGGAGGGATCCCTTCCTTGTCC-TGAATCTTAGCCTTGACAT 53991804 Query 42136 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | |||||| |||| || || || | || || || ||||| || | |||| Sbjct 53991803 TGTCTATCGTGTCTGAGCTC---TCAACTTCCAAGGTTATAGTCTTGCCTGTCAAAGTCT 53991747 Query 42193 TTACAAAGATTTGCATT 42209 | ||||| ||||||||| Sbjct 53991746 TCACAAATATTTGCATT 53991730 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||||||||| ||||| || | || || || ||||| || ||||| Sbjct 23042697 CTCCTTCTGGATGTTGTAATCAGCGAGAGTACGTCCATCCTCGAGTTGCTTCCCGGCGAA 23042756 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || | ||||| || | ||| | | |||||||||| ||| || |||| ||| Sbjct 23042757 GATAAGCCTTTGCTGATCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 23042815 Query 42137 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | ||||| ||| |||||| || | |||||||| || || || || |||| Sbjct 23042816 TGTCGATGGTGTCCGAGCT---TTCCACCTCAAGGGTGATGGTCTTTCCGGTGAGAGTCT 23042872 Query 42193 TTACAAAGATTTGCAT 42208 | || ||||| ||||| Sbjct 23042873 TCACGAAGATCTGCAT 23042888 >seq5 Length=46902585 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | ||| | |||| || | || |||||| || || |||||||| || Sbjct 12956449 CCTCCTCTCAGACGGAGAACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 12956390 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || |||| |||| || |||||||| || ||||| || ||||||||||| || | ||| Sbjct 12956389 AGTGTCCTTCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGTCGCTGCTGATCCGGTGGG 12956330 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | ||||||||| ||| || || | | | | ||||||| ||||| || Sbjct 12956329 ATCCCTTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATCGTGTCGGATGATTCGACC 12956270 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212 || | || || || || |||||||| || || |||||||| ||||||||| Sbjct 12956269 TCTAAGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTTC 12956219 Score = 113 bits (124), Expect = 5e-20 Identities = 157/219 (72%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||||||||| || | || |||||| || || ||||| || || || || || | Sbjct 33725312 ACGCAACACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTGCGACC 33725253 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| |||||||| ||||| ||||||||||| | || | || ||||| Sbjct 33725252 ATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTT 33725193 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 42169 ||| ||| || |||| | | | |||||| |||| || || || | || Sbjct 33725192 GTCTTGGATCTTGGCCTTGACGTTATCAATCGTGTCGGAGCTC---TCGACCTCCAGTGT 33725136 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||| || || || | |||||| |||||||||||||| Sbjct 33725135 GATGGTCTTACCAGTCAACGTCTTGACAAAGATTTGCAT 33725097 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | | ||| ||||| | ||| | || |||||| ||||| |||||||| ||| Sbjct 33725095 CCTCCACGCAGACGTAACACGAGATGAAGAGTAGACTCCTTCTGAATGTTGTAATCGGCC 33725036 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | || || | || || |||||||| || || || || | ||||||||||| | || Sbjct 33725035 AATGTACGACCATCCTCAAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCAGGCGGG 33724976 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 42158 | | ||||||||| || || |||| | | | ||||| |||| ||| Sbjct 33724975 ATTCCCTCCTTGTCTTGTATCTTGGCCTTGACGTTATCGATGGTGTCGGAGCTC---TCC 33724919 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||| ||||| ||||| ||||||| ||||| |||||||| ||||| Sbjct 33724918 ACCTCGAGTGTGATCGTTTTTCCCGTTAAGGTCTTGACAAAGATCTGCAT 33724869 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||||||||| || || | | |||| || |||||||| || ||||| Sbjct 33724832 CTCCTTCTGGATGTTGTAATCAGCTAGGGTTCTCCCGTCCTCGAGCTGCTTTCCGGCGAA 33724773 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || | |||||| || | || | | |||||||| | ||| | || | || | | | Sbjct 33724772 GATAAGCCTCTGCTGATCCGGAGGAATACCCTCCTTGT-CTTGAATCTTGGCTTTAACAT 33724714 Query 42137 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | |||||| ||| |||||| || | ||||| || || ||||| || |||| Sbjct 33724713 TGTCGATCGTGTCAGAGCT---TTCCACCTCAAGGGTGATCGTCTTTCCCGTGAGTGTCT 33724657 Query 42193 TTACAAAGATTTGCAT 42208 | || ||||| ||||| Sbjct 33724656 TAACGAAGATCTGCAT 33724641 >seq1 Length=43764888 Score = 114 bits (126), Expect = 1e-20 Identities = 156/214 (73%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| || | ||| |||||| || || ||||| ||||| ||||| || | || || Sbjct 35467448 CACCAAGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTGCGACCATCCTC 35467389 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| |||||||| ||||| ||||||||||| | || | || ||||||||| Sbjct 35467388 AAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTG 35467329 Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 42174 ||| || |||| ||| | | | ||||| |||| || || || | ||||| | Sbjct 35467328 GATCTTAGCCTTGA-CGTTGTCAATGGTGTCTGAGCTC---TCAACCTCCAATGTGATAG 35467273 Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | ||||| || || ||||| ||||| |||||||| Sbjct 35467272 TCTTGCCGGTAAGGGTCTTCACAAATATTTGCAT 35467239 Score = 104 bits (114), Expect = 3e-17 Identities = 153/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| || | ||| |||||| ||||| |||||||| || | || || | || || Sbjct 35467675 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCTGCTAAGGTGCGACCATCCTCG 35467616 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| |||||||| ||||| ||||||||||| | || | || |||||||| | Sbjct 35467615 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCTTGG 35467556 Query 42120 ATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 42175 || || |||| ||| | | | ||||| |||| ||||| || | |||||||| Sbjct 35467555 ATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTC---TCCACCTCCAGTGTGATGGT 35467500 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || | ||||| ||||| || ||||| Sbjct 35467499 CTTGCCGGTCAAGGTCTTCACAAAAATCTGCAT 35467467 Score = 91.5 bits (100), Expect = 2e-13 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| |||||||| |||| |||| | || || | ||||| ||||| || Sbjct 35467202 CTCCTTCTGAATGTTGTAATCGGCCAAGGTCCTGCCATCTTCCAATTGCTTTCCAGCAAA 35467143 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || | ||||||||||| || | | |||||||||| |||||| ||| | | Sbjct 35467142 GATAAGCCTCTGCTGGTCGGGAGGAATACCCTCCTTGTCCTGGATTTTGGCTTTCACATT 35467083 Query 42137 CGCCACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | |||||| ||| ||||| || | |||||| || || || || | ||||| Sbjct 35467082 GTCAATGGTGTCGGAACTC---TCCACCTCTAGCGTGATCGTCTTTCCTGTCAAAGTCTT 35467026 Query 42194 TACAAAGATTTGCAT 42208 || ||||||||||| Sbjct 35467025 GACGAAGATTTGCAT 35467011 >seq7 Length=48366697 Score = 113 bits (124), Expect = 5e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | || | |||||| || | || |||||| || || ||||| || || Sbjct 20455720 CCTCCTCTCAGCCGGAGCACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 20455779 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || |||| | |||| || |||||||| || || || || || ||||||||||| | ||| Sbjct 20455780 AGCGTCCTCCCGTCTTCCAGCTGCTTCCCGGCAAAGATCAGACGCTGCTGGTCCGGTGGG 20455839 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||||||||| ||| | || | || | | | | ||||||| ||||| || Sbjct 20455840 ATCCCTTCCTTGTCC-TGAATCTTGGCCTTCACATTGTCGATCGTGTCGGATGATTCAAC 20455898 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || | || || || || |||||||| || || |||||||| |||||||| Sbjct 20455899 CTCTAGTGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTT 20455949 >seq4 Length=53719093 Score = 111 bits (122), Expect = 2e-19 Identities = 148/202 (73%), Gaps = 8/202 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || ||||||||||| ||||| || || ||| | || || ||||||||||| ||||| Sbjct 7247680 CTCTTTCTGAATATTGTAGTCAGCGAGCGTGCGCCCATCCTCAAGCTGCTTACCGGCGAA 7247739 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| | ||||||||| | || | || ||||||||| ||| || |||| ||| Sbjct 7247740 GATGAGCCTCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGA-CGT 7247798 Query 42137 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | ||||| |||| || || |||| || ||||| ||||| ||||| || | Sbjct 7247799 TGTCAATAGTGTCGGAGCTC---TCGACCTCGAGAGTAATGGTCTTGCCGGTTAGAGTTT 7247855 Query 42193 TTACAAAGATTTGCATTTTCAC 42214 | || || |||||||| | ||| Sbjct 7247856 TCACGAAAATTTGCATCTGCAC 7247877 Score = 107 bits (118), Expect = 2e-18 Identities = 165/231 (71%), Gaps = 7/231 (3%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | | |||||||||||| || | ||| |||||||||||| ||||| || ||| Sbjct 28156519 CCTCCACGCAGACGCAACACCAAGTGAAGTGTAGACTCCTTTTGAATGTTGTAGTCCGCC 28156460 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | || | |||| || |||||||| || ||||| || | | ||||||||| | || Sbjct 28156459 AATGTTCTGCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGA 28156400 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 42157 | | ||||||||| ||| ||| ||||| ||| | | | || || |||| | | Sbjct 28156399 ATACCCTCCTTGTCTTGGATCTTTGCTTTGA-CGTTGTCAATAGTATCGGAGCTC--TCC 28156343 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || | || || ||||| || || | |||||| |||||||| ||||| Sbjct 28156342 CACCTCCAATGTAATAGTTTTTCCAGTCAACGTCTTGACAAAGATCTGCAT 28156292 Score = 105 bits (116), Expect = 7e-18 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||| || |||||||| || ||||| || | || || ||||| || |||||||| Sbjct 7247452 CTCCTTTTGGATGTTGTAATCCGCAAGAGTGCGACCATCCTCAAGCTGTTTCCCAGCGAA 7247511 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||||| ||||||||| | ||| | | ||||||||| ||| || |||| | Sbjct 7247512 GATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGGATCTTCGCCTTGACATT 7247571 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | ||||| ||| ||| || || | || ||||||||||| || || ||||| Sbjct 7247572 GTCTATTGTGTCTGAGCT---TTCAACCTCCAAAGTAATGGTTTTGCCGGTGAGGGTCTT 7247628 Query 42194 TACAAAGATTTGCAT 42208 ||||| || ||||| Sbjct 7247629 GACAAAAATCTGCAT 7247643 Score = 104 bits (114), Expect = 3e-17 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || |||| |||| || |||||||| || ||||| Sbjct 24867191 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCTGCCGTCCTCGAGCTGCTTCCCGGCGAA 24867250 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | || |||||||| ||| || |||| ||| Sbjct 24867251 GATCAGCCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGT 24867309 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| ||||| || |||| ||||| || || |||||||| || || | Sbjct 24867310 TGTCGATGGTGTCGGAGGATTCGACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTCA 24867369 Query 42196 CAAAGATTTGCATTTT 42211 | ||||| ||||| || Sbjct 24867370 CGAAGATCTGCATCTT 24867385 >seq8 Length=41758685 Score = 109 bits (120), Expect = 6e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || || |||| || |||||||| || ||||| Sbjct 33346228 CTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGTCCGTCTTCGAGCTGCTTCCCGGCGAA 33346169 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || |||||||||||||||| || | | ||||||||| ||| || |||| | Sbjct 33346168 AATCAGTCGCTGCTGGTCGGGAGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 33346109 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| || || || |||| ||||| ||||| |||||||| || || || Sbjct 33346108 GTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATTGTTTTCCCCGTTAGGGTTTTCAC 33346049 Query 42197 AAAGATTTGCATTTT 42211 ||||| ||||| || Sbjct 33346048 GAAGATCTGCATCTT 33346034 >seq3 Length=64984695 Score = 109 bits (120), Expect = 6e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || || |||| || |||||||| || ||||| Sbjct 15816611 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAA 15816552 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || |||||||||||||| | || | || ||||||||| ||| || |||| | Sbjct 15816551 GATCAGTCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 15816492 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| ||||| || |||| ||||| || || |||||||| || || || Sbjct 15816491 GTCGATGGTGTCGGAGGATTCGACTTCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCAC 15816432 Query 42197 AAAGATTTGCATTTT 42211 ||||| ||||| || Sbjct 15816431 GAAGATCTGCATCTT 15816417 Score = 109 bits (120), Expect = 6e-19 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | || |||||||||||| || | || |||||| || || ||||| ||||| Sbjct 59730412 CCTCCACGTAGACGCAACACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCG 59730353 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || | || || | |||||| || ||||| || | | |||||| |||| || Sbjct 59730352 AGAGTACGTCCATCCTCCAACTGCTTTCCGGCGAAGATCAACCTCTGCTGATCGGGGGGG 59730293 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 42157 | || ||||| ||| ||| || ||||| ||| | | | ||||| |||| || Sbjct 59730292 ATGCCTTCCTTATCCTGGATCTTGGCTTTGA-CGTTGTCGATGGTGTCCGAGCTC---TC 59730237 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| |||| |||||||| || || || || ||||| || ||||| ||||| Sbjct 59730236 CACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 59730186 Score = 104 bits (114), Expect = 3e-17 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | || |||||| ||||| || | || |||||| || ||||||||||||||| Sbjct 34861611 CCTCCGCGTAGACGCAAGACCAAGTGGAGCGTAGACTCCTTCTGGATATTGTAATCAGCC 34861670 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | |||| |||| || | |||||| || ||||| ||||| | |||||| || | ||| Sbjct 34861671 AAGGTCCTGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGTGGG 34861730 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 42157 | | |||||| ||| || | || | || | ||| | | | ||||| |||| || Sbjct 34861731 ATTCCCTCCTTATCC-TGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTC---TC 34861786 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || | ||||| || || || || | |||||| || || || ||||| Sbjct 34861787 CACCTCCAAAGTGATAGTCTTTCCGGTCAACGTCTTGACGAAAATCTGCAT 34861837 Score = 104 bits (114), Expect = 3e-17 Identities = 155/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||||||||| || | || |||||| ||||| ||||| || || || || || | Sbjct 59730857 ACGCAACACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGACC 59730798 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| |||||||| ||||| ||||||||||| | || | | ||||| Sbjct 59730797 ATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATCCCTTCCTT 59730738 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA---TTCCACATCGACCGT 42169 ||| ||| || |||| | | | ||||| ||| ||||| || | || Sbjct 59730737 GTCTTGGATCTTGGCCTTGACGTTATCAATGGTGTC---CGAACTCTCCACCTCCAGTGT 59730681 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||| || || |||| ||||| |||||||| ||||| Sbjct 59730680 GATGGTCTTTCCGGTTAAGGTCTTGACAAAGATCTGCAT 59730642 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || || || || || || ||||||| ||| || | || || ||||| || |||||||| Sbjct 11141369 TCTTTCTGGATGTTATAGTCAGCCAAAGTACGACCATCCTCAAGCTGTTTGCCAGCGAAG 11141428 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| ||||||||||| | || | | ||| |||||| |||||| ||| | ||| Sbjct 11141429 ATGAGACGCTGCTGGTCCGGAGGAATACCCTCTTTGTCCTGGATTTTGGCTTTCA-CGTT 11141487 Query 42138 G-CCACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | | |||||| ||| ||||| || | ||||| || || || |||| ||||| Sbjct 11141488 GTCAATGGTGTCGGAACTC---TCCACCTCTAGAGTGATCGTCTTTCCTGTTAAAGTCTT 11141544 Query 42194 TACAAAGATTTGCAT 42208 || ||||||||||| Sbjct 11141545 CACGAAGATTTGCAT 11141559 Score = 91.5 bits (100), Expect = 2e-13 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||||||||| ||||| || || | || || | || || |||||||| |||||||| Sbjct 16418774 CTCCTTTTGAATGTTGTAGTCTGCTAAGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAA 16418833 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | || || ||||| ||| || || | | Sbjct 16418834 GATGAGACGCTGCTGGTCCGGAGGGATGCCTTCTTTGTCTTGGATCTTGGCCTTCACGTT 16418893 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | ||||| |||| ||||| || | |||||||| ||||| || || ||||| Sbjct 16418894 ATCAATAGTGTCGGAGCTC---TCCACCTCCAGTGTGATGGTCTTGCCGGTAAGAGTCTT 16418950 Query 42194 TACAAAGATTTGCAT 42208 || ||||| ||||| Sbjct 16418951 CACGAAGATCTGCAT 16418965 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | ||||||||| || || | || |||||| || || ||||| || || Sbjct 59730641 ACCTCCACGCAGACGCAACACTAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGC 59730582 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || |||||||| || || || ||||| ||||||||||| | || Sbjct 59730581 AAGGGTGCGACCATCCTCAAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCCGGAGG 59730522 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCG---CTCGATT 42156 | | |||||||| ||| || |||| ||| | | | |||||| ||| | Sbjct 59730521 GATCCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGAACTC---T 59730466 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || | || || || || ||||| || ||||| |||||||| ||||| Sbjct 59730465 CGACCTCTAGAGTAATCGTCTTTCCCGTCAGTGTCTTGACAAAGATCTGCAT 59730414 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | ||| | ||||| || | ||| |||||| || || ||||| || || Sbjct 11141104 ACCTCCACGGAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCTGC 11141163 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || |||||||| || ||||| ||||| ||||||||||| | || Sbjct 11141164 CAAGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGAGG 11141223 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATT 42156 | | |||||||| ||| || || | ||| | | | ||||| |||| | Sbjct 11141224 AATACCTTCCTTGTCTTGGATCTTGGCCTTCA-CGTTGTCAATGGTGTCGGAGCTC---T 11141279 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || | |||||||| ||||| || | ||||| || || || ||||| Sbjct 11141280 CCACCTCAAGTGTGATGGTCTTGCCGGTCAAGGTCTTAACGAAAATCTGCAT 11141331 >seq6 Length=39822476 Score = 107 bits (118), Expect = 2e-18 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || || |||| || ||||| || || ||||| Sbjct 23704378 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCTTCCAGCTGTTTCCCGGCGAA 23704319 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || |||||||||||||| | || | || ||||||||| ||| || |||| ||| Sbjct 23704318 GATCAGTCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 23704260 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| || || || |||| |||||||| || |||||||| || || | Sbjct 23704259 TGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTCCCCGTTAGGGTTTTAA 23704200 Query 42196 CAAAGATTTGCATTTT 42211 | ||||| ||||| || Sbjct 23704199 CGAAGATCTGCATCTT 23704184 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | || |||||||||||| || | || |||||| || || |||||||||||| Sbjct 26070895 CCTCCACGTAGACGCAACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCAGCC 26070836 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | |||| |||| || |||||||| ||||| || || || | ||||||||||| || Sbjct 26070835 AATGTCCTGCCGTCTTCAAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGA 26070776 Query 42102 ACGCTCTCCTTGTCC 42116 | | |||||||||| Sbjct 26070775 ATACCCTCCTTGTCC 26070761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542989498798240