Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1 102 6e-17 seq5 93.3 3e-14 seq7 91.5 1e-13 seq4 91.5 1e-13 seq3 91.5 1e-13 seq9 82.4 5e-11 >seq1 Length=43764888 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | || | || || ||||| ||||| || || || |||||||||||| Sbjct 35467239 TGCCACCACGGAGCCTGAGGACCAAGTGAAGCGTAGACTCCTTCTGAATGTTGTAATCGG 35467180 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | | || | ||||| ||||| || ||||| | || | | ||| |||||| | Sbjct 35467179 CCAAGGTCCTGCCATCTTCCAATTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCGGGAG 35467120 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| || |||||||| |||||| ||| ||| | || || || ||| | | || | Sbjct 35467119 GAATACCCTCCTTGTCCTGGATTTTGGCTTTCACATTGTCAATGGTGTCGGAACTCTCCA 35467060 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | |||| || || || || ||||||| ||| || || || |||||||| Sbjct 35467059 CCTCTAGCGTGATCGTCTTTCCTGTCAAAGTCTTGACGAAGATTTGCAT 35467011 >seq5 Length=46902585 Score = 93.3 bits (102), Expect = 3e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || || || || |||||||||||| ||| | || ||||||| | || Sbjct 12956425 TGAAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGTGTCCTTCCGTCTTCCAGCTGC 12956366 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || ||| | |||| ||||| || || ||| || ||||||||||| || ||| Sbjct 12956365 TTCCCGGCGAAGATCAGTCGCTGCTGATCCGGTGGGATCCCTTCCTTGTCCTGGATCTTG 12956306 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || || || ||| ||| || |||||||| || || || || || Sbjct 12956305 GCCTTCACATTGTCGATCGTGTCGGATGATTCGACCTCTAAGGTTATCGTCTTCCCCGTT 12956246 Query 15154 AGAGTTTTTACAAAAATTTGCATATT 15179 || ||||| ||||| || ||||| || Sbjct 12956245 AGGGTTTTCACAAAGATCTGCATTTT 12956220 >seq7 Length=48366697 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| || || || || || |||||||| || ||| | ||| ||||||| Sbjct 20455738 ACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTCCTCCCGTCTTCC 20455797 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || || || | |||| |||||| ||||| ||| || ||||||||||| | Sbjct 20455798 AGCTGCTTCCCGGCAAAGATCAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTGTCCTGA 20455857 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| || ||| | || || || ||| ||| || |||| || || || || Sbjct 20455858 ATCTTGGCCTTCACATTGTCGATCGTGTCGGATGATTCAACCTCTAGTGTTATCGTCTTC 20455917 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 || || || ||||| ||||| || ||||| ||| Sbjct 20455918 CCCGTTAGGGTTTTCACAAAGATCTGCATTTTT 20455950 >seq4 Length=53719093 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || ||||| || ||||| ||||||||||| ||| | | | || || | || Sbjct 7247440 ATGGAGCGTAGACTCCTTTTGGATGTTGTAATCCGCAAGAGTGCGACCATCCTCAAGCTG 7247499 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| |||||| | || | | ||| ||||| ||| || ||||||||||| || || Sbjct 7247500 TTTCCCAGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGGATCTT 7247559 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || ||| | ||||| || || |||| || || || ||||||||||| || || Sbjct 7247560 CGCCTTGACATTGTCTATTGTGTCTGAGCTTTCAACCTCCAAAGTAATGGTTTTGCCGGT 7247619 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 || || || |||||||| |||||| Sbjct 7247620 GAGGGTCTTGACAAAAATCTGCATA 7247644 >seq3 Length=64984695 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||||| ||||| ||||| || |||||||| || ||| ||| | || | || || || || Sbjct 34861179 TGAAGCGTAGATTCTTTCTGGATGTTGTAGTCAGCT-AGAGTCCTTCCATCCTCCAACTG 34861237 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||||| || | ||||| | ||| ||||| ||| || || |||||||| || || Sbjct 34861238 CTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGGATCCCCTCCTTGTCTTGGATCTT 34861297 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | ||| || | || ||||| || | || || || || ||||| || || || || Sbjct 34861298 GGCTTTCACGTTGTCAATAGTGTCTGAGCTCTCCACCTCCAAAGTAATCGTCTTCCCCGT 34861357 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || || || |||||||||||||| Sbjct 34861358 CAAGGTCTTGACAAAAATTTGCAT 34861381 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | || | ||| | |||||| ||||| || || || |||||||| ||| Sbjct 16419195 CCACCACGAAGCCTGAGAACGAGATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCC 16419254 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | |||| ||||||| | || || || ||| | || | | ||| || ||| || Sbjct 16419255 AAAGTTCTGCCGTCTTCAAGCTGCTTTCCGGCGAAAATGAGCCTCTGCTGATCGGGAGGG 16419314 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| ||| ||| ||| || | || || || || |||| || Sbjct 16419315 ATACCTTCCTTGTCCTGAATCTTGGCTTTAACGTTGTCAATGGTGTCAGAGCTTTCCACC 16419374 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| ||||| || || || ||||| || || || || ||||| Sbjct 16419375 TCGAGGGTGATGGTCTTTCCCGTGAGAGTCTTAACGAAGATCTGCAT 16419421 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 ||||| || | || | || || ||||| ||||| || || || |||||||| || || Sbjct 11141789 CCACCACGAAGCCTGAGGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCC 11141848 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || ||||| ||||||| || || || ||||| | || | | ||| || || || Sbjct 11141849 AAGG-TTCTCCCGTCTTCCAACTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGAGG 11141907 Query 15069 AATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 ||| ||||||||||| || ||||| ||| || | || || || || |||| | Sbjct 11141908 AATGCCTTCCTTGTCCTGGATCTTTGC-TTTAACGTTGTCGATGGTGTCAGAGCTTTCCA 11141966 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | ||| ||||| || || || |||||||| || || || ||||| Sbjct 11141967 CCTCGAGGGTGATGGTCTTCCCGGTGAGAGTTTTCACGAAGATCTGCAT 11142015 >seq9 Length=54679868 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || || || || ||||||||||| | | | || | || || | ||| Sbjct 53991933 TGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCCAAAGTCCTACCATCCTCAAGCTGT 53991874 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || |||||| | || | | ||||||||| || || ||||||||||| ||| || Sbjct 53991873 TTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGGATCCCTTCCTTGTCCTGAATCTTA 53991814 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | ||||| || || | || || || ||||| || || || |||||| Sbjct 53991813 GCCTTGACATTGTCTATCGTGTCTGAGCTCTCAACTTCCAAGGTTATAGTCTTGCCTGTC 53991754 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 | ||| || ||||| |||||||| Sbjct 53991753 AAAGTCTTCACAAATATTTGCAT 53991731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357248757956510