Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq3 560 1e-154 seq5 354 1e-92 seq6538 109 7e-19 seq24928 96.9 4e-15 seq4 93.3 5e-14 seq9 89.7 6e-13 seq1 84.2 3e-11 >seq3 Length=64984695 Score = 560 bits (620), Expect = 1e-154 Identities = 734/1014 (72%), Gaps = 2/1014 (0%) Strand=Plus/Plus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | ||| | || || ||||| |||| || ||||||||| || ||||| Sbjct 33665121 AGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 33665180 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | |||||||| || || | |||||| || || || || || || |||||||| ||| Sbjct 33665181 TGAGCCGCCATCCAAGCGCGAATACCTTCGTTTAAAAGAATATTTTTAGTATAGAAAGTC 33665240 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442 || || || ||||| |||||||| | ||| || || ||||| |||||||| || | ||| Sbjct 33665241 TCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACGTAGG 33665300 Query 6443 TTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAAC 6502 || | || ||||| | | |||| | |||| | ||| | || || ||||| Sbjct 33665301 TTCAAAGCTAGACCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACTGGTACAAAT 33665360 Query 6503 AGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAG 6562 | |||||||||||||| |||||| |||||| || || | |||||||| || ||||| Sbjct 33665361 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTGACCAA 33665420 Query 6563 AAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTG 6622 || || ||||| |||||||| ||||| || || || |||| || || | ||| || | Sbjct 33665421 AAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAGCACGG 33665480 Query 6623 AAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATA 6682 || ||||||| |||||||||||||| |||||||| |||||||||||||| |||||| Sbjct 33665481 AATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCATGAATA 33665540 Query 6683 GCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGC 6742 || || | || || | || | | ||| || || |||||||||||||| ||||| | Sbjct 33665541 GCGCATAACAGAGCCGCGCCCAGTACACCAGCGACTCCCATCATATGAAATGGGTTCAAT 33665600 Query 6743 GTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAAC 6802 ||||| || || || || || | ||||| | ||| || ||||| || || |||||||| Sbjct 33665601 GTCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCCGCTACACCAAAA 33665660 Query 6803 GACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAG 6862 |||||||||||||||| || || || || ||||| || ||||||||||| ||||| Sbjct 33665661 CTAGGCGCAAAGAACCAACCAGATTGACCTAGTGGATAAATTAGAAAGACAGAAACAAAA 33665720 Query 6863 ACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA-CGTGC 6921 |||||||| |||||||| || ||||||||||| || || || | | || ||| || || Sbjct 33665721 ACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCGCA-ATTGAACAGATCGAGC 33665779 Query 6922 GATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAA 6981 | ||||| || || | ||| |||||||| | || || || |||||| | || ||||| Sbjct 33665780 AAGTTCAAATTGACGTAACATAAAACCTATTAATGCGAAAGCACCGTGGTGAGCAACAAA 33665839 Query 6982 AGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCA 7041 || ||| || || || | ||| ||| || |||||||| || ||||| |||||||| Sbjct 33665840 AGCCCACAGACCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGACCCCA 33665899 Query 7042 TAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAA 7101 || | | | ||||| | | | | ||||||||| || || ||||| || | || Sbjct 33665900 CAGTAACAACAAAGAATGCGCTAAACTATTAGCAGGAGTAGAAACTGCAGCGGTTAAAAA 33665959 Query 7102 ATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAGT 7161 ||| || || || | ||| ||| ||| | || ||||| ||||| || || || || Sbjct 33665960 ATTGCAACCTTCTAAATAGGAACTAGCCAATCCATGAGTATACCATGAAGTTACAAAGGT 33666019 Query 7162 TGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTGA 7221 ||| || |||| |||||| |||| || | || ||| ||| || || | ||||| || Sbjct 33666020 TGTACCTGTGAACCAACCCCCCAAAGCGAAATAGGCACAAGGAAAGAGCAATAGACCAGA 33666079 Query 7222 CCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATCGAGTACATCAAA 7275 |||||| ||||||||||| | || | | | ||||||||| | | |||||| Sbjct 33666080 CCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 33666133 >seq5 Length=46902585 Score = 354 bits (392), Expect = 1e-92 Identities = 424/576 (74%), Gaps = 0/576 (0%) Strand=Plus/Minus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | ||| | || || ||||| |||| || ||||||||| || ||||| Sbjct 22001368 AGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 22001309 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | |||||||| || || | |||||| || || || || || || |||||||| ||| Sbjct 22001308 TGAGCCGCCATCCAAGCGCGAATACCTTCGTTTAAAAGAATATTTTTAGTATAGAAAGTC 22001249 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442 || || || ||||| |||||||| | ||| || || ||||| |||||||| || | ||| Sbjct 22001248 TCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACGTAGG 22001189 Query 6443 TTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAAC 6502 || | || ||||| | | |||| | |||| | ||| | || || ||||| Sbjct 22001188 TTCAAAGCTAGACCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACTGGTACAAAT 22001129 Query 6503 AGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAG 6562 | |||||||||||||| |||||| |||||| || || | |||||||| || ||||| Sbjct 22001128 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTGACCAA 22001069 Query 6563 AAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTG 6622 || || ||||| |||||||| ||||| || || || |||| || || | ||| || | Sbjct 22001068 AAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAGCACGG 22001009 Query 6623 AAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATA 6682 || ||||||| |||||||||||||| |||||||| |||||||||||||| |||||| Sbjct 22001008 AATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCATGAATA 22000949 Query 6683 GCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGC 6742 ||||| | || || | || | | ||| || || |||||||||||||| ||||| | Sbjct 22000948 GCACATAACAGAGCCGCGCCCAGTACACCAGCGACTCCCATCATATGAAATGGGTTCAAT 22000889 Query 6743 GTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAAC 6802 ||||| || || || || || | ||||| | ||| || ||||| || || |||||||| Sbjct 22000888 GTCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCCGCTACACCAAAA 22000829 Query 6803 GACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGA 6838 |||||||||||||||| || || || || ||| Sbjct 22000828 CTAGGCGCAAAGAACCAACCAGATTGACCTAGTGGA 22000793 >seq6538 Length=695 Score = 109 bits (120), Expect = 7e-19 Identities = 209/308 (68%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 6968 TGGAGCGCCACAAAAGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGA 7027 || || || ||||||| ||| || || || | ||| ||| || ||| || || || Sbjct 695 TGAAGAGCAACAAAAGCCCACAGACCGCCTAATTGACACCAACGAGTGAAGTCCCCTTGT 636 Query 7028 GCTTCTGGACCCCATAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACA 7087 ||||| |||||||| || | | | |||| | | | | ||||||||| || || Sbjct 635 GCTTCAGGACCCCACAGTAACAACAAAAAATGCGCTAAACTTTTAGCAGGAGTAGAAACT 576 Query 7088 GCAGCAGTAAGGAAATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAG 7147 ||||| || | ||||| || || || | ||| ||| ||| | || ||||| ||||| Sbjct 575 GCAGCGGTTAAAAAATTGCAACCTTCTAAATAGGAACTAGCCAATCCATGAGTATACCAT 516 Query 7148 CTCGTGACGAAAGTTGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAAC 7207 || || || ||||| || |||| |||||| |||| || | ||| ||| || Sbjct 515 GAAGTTACAAAGGTTGTACCTGTGAACCAACCCCCCAAAGCGGAATTGGCACAAGGAAAG 456 Query 7208 AGAAGAAGACCTGACCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATCGAGT 7267 || | ||||| |||||||| ||||||||||| | || | | | ||||||||| | Sbjct 455 AGCAATAGACCAGACCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCAGTCATCCATA 396 Query 7268 ACATCAAA 7275 | |||||| Sbjct 395 ATATCAAA 388 >seq24928 Length=265 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 176306 TGGAGAATAGGAGACTCGAACTCCTGACAGCCTGCTTGCAAAGCAGGTGCTCTACCAACT 176365 |||||| ||||||| ||||||||||||| ||||| ||||||||||| |||||||||||| Sbjct 100 TGGAGACTAGGAGAGTCGAACTCCTGACCTCCTGCGTGCAAAGCAGGCGCTCTACCAACT 41 Query 176366 GAGCTAATTCCCC 176378 |||||| ||||| Sbjct 40 AAGCTAAGTCCCC 28 >seq4 Length=53719093 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 10249 GTGGGATAAGAAACACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAAC 10308 || ||||||| |||| || |||| ||| || | | |||||||||||||| ||||| Sbjct 20464769 GTAGGATAAGCCGCACAAGTGAGAACGAATCCTTCCGCAATCTGGTCATCATCGAGGAAA 20464710 Query 10309 GATTGATCGCTTTGATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCA 10368 || || || || || | || || | | ||| |||||||| ||||| |||| | Sbjct 20464709 CTCTGGTCAGACTGGTCAACAGATCCAGACACAACTTTACCTGCACAGCTCGAGCAGGAA 20464650 Query 10369 CCAGCTCGGCACGAGTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTAC 10428 ||||| ||||| ||||| | ||| || || ||||| |||||||| || || | ||| Sbjct 20464649 CCAGCACGGCAAGAGTAAGGCAAGTCGATTCCGGCTTCCTCAGCAGCGTCTAGGACGTAG 20464590 Query 10429 TGATCGTCAGCACACTCAA 10447 ||||| | ||||||| Sbjct 20464589 ACGTCGTCGTCGCACTCAA 20464571 >seq9 Length=54679868 Score = 89.7 bits (98), Expect = 6e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 10249 GTGGGATAAGAAACACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAAC 10308 || ||||||| |||| || |||| || || || | |||||||||||||| ||||| Sbjct 13977474 GTTGGATAAGCCGCACAAGTGAGAACAAACCCTTCAGCAATCTGGTCATCATCGAGGAAA 13977533 Query 10309 GATTGATCGCTTTGATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCA 10368 || || || || || | ||| || | | ||| |||||||| ||||| || | | Sbjct 13977534 CTCTGGTCAGACTGGTCAACAGAACCAGACACAACTTTACCTGCACAGCTCGAGCAAGAA 13977593 Query 10369 CCAGCTCGGCACGAGTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTAC 10428 || || ||||| ||||| | ||| || |||||||| || ||||| || || | ||| Sbjct 13977594 CCGGCACGGCAAGAGTAAGGCAAGTCGATCCCTGCTTCCTCCGCAGCGTCGAGGACGTAA 13977653 Query 10429 TGATCGTCAGCACACTCAA 10447 ||||| | ||||||| Sbjct 13977654 ACGTCGTCGTCGCACTCAA 13977672 >seq1 Length=43764888 Score = 84.2 bits (92), Expect = 3e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 10249 GTGGGATAAGAAACACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAAC 10308 || ||||||| |||| || |||| || || || | |||||||||||||| ||||| Sbjct 27930731 GTAGGATAAGCCGCACAAGTGAGAACAAACCCTTCAGCAATCTGGTCATCATCGAGGAAA 27930672 Query 10309 GATTGATCGCTTTGATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCA 10368 || || || || || | || || | | |||||| ||||| || || || | | Sbjct 27930671 CTCTGGTCAGACTGGTCAACAGATCCAGACACAACTTTGCCGGCACAGCTTGAGCACGAA 27930612 Query 10369 CCAGCTCGGCACGAGTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTAC 10428 ||||| ||||| ||||| | ||| || || |||||||| ||||| || || | ||| Sbjct 27930611 CCAGCACGGCAAGAGTAAGGCAAGTCGATCCCGGCTTCTTCCGCAGCGTCGAGGACGTAG 27930552 Query 10429 TGATCGTCAGCACACTCAA 10447 ||||| | ||||||| Sbjct 27930551 ACGTCGTCGTCGCACTCAA 27930533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621869060047840