Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2 125 9e-24 seq7 102 1e-16 seq8 100 3e-16 >seq2 Length=52886895 Score = 125 bits (138), Expect = 9e-24 Identities = 192/271 (71%), Gaps = 7/271 (3%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || || ||||| || ||||| || || || |||||| || || |||||||| || Sbjct 45186989 GTGAAGGCCTTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCC 45187048 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| |||| || || || |||||||||||||| || || || Sbjct 45187049 ACGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATCCCTTCGACGCA 45187108 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 |||||||| | | | |||||| || | | || | || | ||||||||| || Sbjct 45187109 AGCGAACGCCACGATCCTCTCGGCGAAAGTCTGAGA---TCCGTCGATCCACTTCATGGC 45187165 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 127770 ||| || ||||| ||| ||| || |||| ||||| ||||| ||||| | | | | Sbjct 45187166 CCATTGGGCCTTCTTCGCGACGCAAGGGATGGTCTCAATCGCGCGGAAGAGATGGTCCCT 45187225 Query 127771 TTC--TGATGGATCTTTGATGTACTTATCTA 127799 || || || || ||||||||| |||||| Sbjct 45187226 CTCCTTGTTG--TCCTTGATGTACGTATCTA 45187254 >seq7 Length=48366697 Score = 102 bits (112), Expect = 1e-16 Identities = 152/215 (71%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 || ||||| |||||||| | || || |||||| | || |||||||| || |||||| Sbjct 33023959 CCTTCGTCTCGGGAGATCAACTCGTTGGAGAAGGTTAACCCAGGCATGAGCCCTCGCTTC 33024018 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | |||||| |||| || || || |||||||||||||| || || || ||||| Sbjct 33024019 TTAAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATCCCTTCGACGCAAGCGAAG 33024078 Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGT 127717 || | | | |||||| || | | || | ||| | |||| |||| ||||| || Sbjct 33024079 GCGACGATCCTCTCGGCGAAAGTCTGAGA---TCCATCGATCCACGTCATGGCCCATTGG 33024135 Query 127718 GCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 ||||| ||| ||| || |||| ||| | ||||| Sbjct 33024136 GCCTTCTTCGCGACGCAAGGGATGGTTTCAATCGC 33024170 >seq8 Length=41758685 Score = 100 bits (110), Expect = 3e-16 Identities = 271/405 (67%), Gaps = 16/405 (4%) Strand=Plus/Plus Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761 || ||||| || ||||| | || | |||| |||||| |||||| | || || || Sbjct 1370812 CGGTCAAAACGCCCTGGTCTCAGCAAGGCGGAGTCAAGAATATCAGCTCTATTAGTTGCA 1370871 Query 12762 GCGATGACAACGATGCCCGTCTCGTTA---TCGAAGCCATCCATCTCAGTCAAGAGTTGA 12818 || | |||| || || || |||| || || |||||||||||||||||||| || Sbjct 1370872 GCAACAACAATGACACCAGT---GTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGG 1370928 Query 12819 TTGATGGTTTGTTCACGTTCATCATT--CGCGGGC-ATACCACCCGCACTGCGTTGCTTA 12875 || | ||| || || | ||||||||| | | | || ||| | | || ||| || Sbjct 1370929 TTCAAGGTCTGCTCTCTTTCATCATTACCTCCACCAATCCCAGTCCCTCT---CTGCCTA 1370985 Query 12876 CCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATT-TTCACGGGCAACTTC 12934 || || || ||||| ||||| | || || || ||||| ||| | | | | ||| Sbjct 1370986 CCAACAGCATCAATCTCGTCCACAAAGACAATGCACGGCGCATTCTCCTTAGCCTTCTTG 1371045 Query 12935 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGC 12994 ||| | ||| ||||| ||| ||||| ||||| ||||||||||| || || | | | Sbjct 1371046 AAA-AGATCACGCACCCTCGAAGCACCAACACCGACAAACATCTCAACGAACTCAGACCC 1371104 Query 12995 GGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 13053 | | || | | ||| || || || |||||| || |||||| ||| | |||||| | Sbjct 1371105 CG-AGATGGAAAAGAAAGGCACACCGGCTTCACCAGCAATGGCTTTGGCCAAGAGGGTTT 1371163 Query 13054 TCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCC 13098 | || || || || || |||| ||| |||| ||||||| Sbjct 1371164 TACCAGTACCGGGAGGACCAACGAGGAGGACACCTTTAGGGATCC 1371208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613255002527760