Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2 196 8e-45 seq7 161 2e-34 >seq2 Length=52886895 Score = 196 bits (216), Expect = 8e-45 Identities = 554/840 (66%), Gaps = 22/840 (3%) Strand=Plus/Plus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707 |||||||||| || || || || |||| | || || | ||||| | | || || | Sbjct 45186703 TCTTCTCGAAGAAATTCGTTTTCCCCTGAAGCGAGATCAACTCCATCCAATCAAACGGAT 45186762 Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 || ||| || |||| | || || || ||| |||||| || ||||| || | Sbjct 45186763 TCGCCACACCGTACACCTTCCCGTACCCAAGCGCACCCAACAACCTATCCGCCACGAACT 45186822 Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCA--GCCTAACGGGGAGCGCTTC 159825 | || || || |||| || | ||| ||||||| || || || || ||||| || Sbjct 45186823 CAATATACTGACTCATCAAGTCCCGGTTCATCCCCACCAACGCGCAA--GGAAGCGCGTC 45186880 Query 159826 CGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTA 159885 | | ||||||| |||| ||||| ||||| ||| ||| ||| | || || || | Sbjct 45186881 GCAGACAAACTCCCTCTCGATCTCCACCGCGTCGCACACGATCGACTTCACGCGCTCTTC 45186940 Query 159886 CCCCGGCTT-GCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 | |||| | || || ||| | | | |||||||| ||||||||||| || | Sbjct 45186941 CGATAGCTTCGTCCTCAAGAGGGT----ATAGATCAGGCACGCGAAGTCGCAGTGAAGGC 45186996 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 | ||||| || ||||| | ||||||||| | | |||| |||||||||| ||||||| | Sbjct 45186997 CTTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCCACGCTTCT 45187056 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCCTCCACGGCCGCAAAC 160063 ||||||| || || | ||| |||| |||| || |||||||| || ||| || ||| Sbjct 45187057 TGAGCCAGAAGATCG-AGCAGAAGCTACCGGAGAAGAAGATCCCTTCGACGCAAGCGAAC 45187115 Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCA 160123 ||||||| |||||| | ||| | | | | | | ||||| | ||||||||| Sbjct 45187116 GCCACGATCCTCTCGGCGAAA---GTCTGAGATCCGTCGATCCACTTCATGGCCCATTGG 45187172 Query 160124 GCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTC 160183 |||||||| |||| ||| || ||| ||| | ||| || | |||| |||||| Sbjct 45187173 GCCTTCTTCGCGACGCAAGGGATGGTCTCAATCGCGCGGAAGAGATGGTCCCTCTCCTTG 45187232 Query 160184 ACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATG 160243 |||||||| ||| | | || |||||| || | ||| | ||| ||||| Sbjct 45187233 TTGTCCTTGATGTACGTATCTAACAAGAGACTGTACATCTCCGAGTGGATATTCTCGATC 45187292 Query 160244 GCCATCTGAAAGTTGTAGAAATATGTCGCCTC-CAGATACTGCACCTCCTGTGTGAACCT 160302 || ||||| || |||||| |||||| ||| |||||| || |||||| Sbjct 45187293 GCGATCTGGAACCCGTAGAAGGCGCGCGCCTCGGAGA-CCTGCACGTCGGACATGAACCG 45187351 Query 160303 TTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGA 160362 | ||||| | ||| | |||||||| ||| || ||||| || | ||||| Sbjct 45187352 GGTGGCGAGATTCTCGAGAACGATCCCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGTTT 45187411 Query 160363 GATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGT---GTGTCACGTCTTGGGC 160419 |||||| || | ||| | | || ||| | || ||||||| |||| |||||||| Sbjct 45187412 GATGAAGTGGCGCTCTCCGTCGTCGAGATTGTTCTCCCAGTCGCGTGT---GTCTTGGGA 45187468 Query 160420 CAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGAT 160479 | || || ||||| ||| |||| || || | || | |||||||| ||||||| Sbjct 45187469 GAGGTCGACTTCTTCGGCGGTCCAGAAGGAGGCTTCGGCTTTCTTGTACATCTCCCAGAT 45187528 >seq7 Length=48366697 Score = 161 bits (178), Expect = 2e-34 Identities = 543/836 (65%), Gaps = 17/836 (2%) Strand=Plus/Plus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707 |||||||||| ||||| || || |||| | || || | ||||| | | || || | Sbjct 33023666 TCTTCTCGAAGAAGTTCGTTTTCCCCTGAAGCGAGATCAACTCCATCCAATCAAACGGAT 33023725 Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 || ||| || |||| | || || || ||| || ||| || |||||||| | Sbjct 33023726 TCGCCACACCGTACACCTTCCCGTACCCAAGCGCACCCAACAGCCTATCCGCCACAAACT 33023785 Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCA--GCCTAACGGGGAGCGCTTC 159825 |||| || || |||| | |||| ||| ||||||| || || || || ||||| || Sbjct 33023786 CGATATACTGACTCATCAGGTCACGGTTCATCCCCACCAACGCGCAA--GGAAGCGCGTC 33023843 Query 159826 CGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTA 159885 ||| ||||||| |||| ||||||||||| ||| || ||| | || || || | Sbjct 33023844 GCACACAAACTCCCTCTCGATCTCGACCGCGTCGCAGACGATCGACTTCACGCGCTCCTC 33023903 Query 159886 CCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCC 159945 | |||| | | | || || | | ||||| || || |||||||||| || Sbjct 33023904 CGTGAGCTTCGTCCTCAGGAGGG---TATAGATCAGGCAGGCGAAATCGCAGTGCAAGCC 33023960 Query 159946 CTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTT 160005 ||||| || ||||| ||||||||||| | | | | || ||||||| ||| ||| || Sbjct 33023961 TTCGTCTCGGGAGATCAACTCGTTGGAGAAGGTTAACCCAGGCATGAGCCCTCGCTTCTT 33024020 Query 160006 GAGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACG 160064 ||||| || || | ||| |||| |||| || |||||||| || ||| || || | Sbjct 33024021 AAGCCAGAAGATCG-AGCAGAAGCTACCGGAGAAGAAGATCCCTTCGACGCAAGCGAAGG 33024079 Query 160065 CCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAG 160124 | |||| |||||| | ||| | | | ||| | ||||| | ||||||||| | Sbjct 33024080 CGACGATCCTCTCGGCGAAA---GTCTGAGATCCATCGATCCACGTCATGGCCCATTGGG 33024136 Query 160125 CCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCA 160184 ||||||| |||| ||| || ||| || | ||| || | |||| |||||| Sbjct 33024137 CCTTCTTCGCGACGCAAGGGATGGTTTCAATCGCGCGGAAAAGGTGGTCCCTCTCCTTGT 33024196 Query 160185 CATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGG 160244 |||||||| || | | ||| |||||| |||| ||| | ||| || || | Sbjct 33024197 TGTCCTTGATGTACGTGTCGAGCAGGAGGCTGTACATCTCTGAGTGGATATTCTCAATCG 33024256 Query 160245 CCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATAC-TGCACCTCCTGTGTGAACCTT 160303 | ||||| || |||||| ||||| | || || ||||| || |||||| Sbjct 33024257 CGATCTGGAACCCGTAGAAGGCACGCGCCT-CGGAGACTTGCACGTCGGACATGAACCGC 33024315 Query 160304 TGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAG 160363 | ||||| | ||| | ||||| | ||| || ||||| || | ||||| | Sbjct 33024316 GAGGCGAGATTCTCCAAAACGATTCCGTCTGAGGCGGCGAAGAAGGCGAGGACGTGTTTG 33024375 Query 160364 ATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCCAAA 160423 ||||| |||| ||| | | |||||| || ||||||| |||||||| | Sbjct 33024376 ATGAAGTGTCGCTCTCCGTCGTTGAG---ATTCTCCCAGTCGCGATTGTCTTGGGAGAGG 33024432 Query 160424 TCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGAT 160479 || || ||||| ||| |||| | || | || | |||||||| ||||||| Sbjct 33024433 TCGACTTCTTCGGCGGTCCAGAAAGAGGCTTCGGCCTTCTTGTACATCTCCCAGAT 33024488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794828331576160