Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq3 82.4 5e-11 >seq3 Length=64984695 Score = 82.4 bits (90), Expect = 5e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 |||||| || || || || || || | | | | |||| ||||| || || ||| |||| Sbjct 34861190 TTCTTTCTGGATGTTGTAGTCAGCTAGAGTCCTTCCATCCTCCAACTGCTTGCCGGCAAA 34861249 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 || || | |||||| |||| || | || || ||||| || || ||| | ||| Sbjct 34861250 GATCAACCTCTGCTGGTCCGGTGGGATCCCCTCCTTGTCTTGGATCTTGGCTTTCA-CGT 34861308 Query 39648 CGCTACT-GTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706 | | | ||||||| ||| ||||| ||||||||||| || || ||||| || || || | Sbjct 34861309 TGTCAATAGTGTCTGAGCTCTCCACCTCCAAAGTAATCGTCTTCCCCGTCAAGGTCTTGA 34861368 Query 39707 CGAAGATCTGCATG 39720 | || || |||||| Sbjct 34861369 CAAAAATTTGCATG 34861382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347230374915638